Analysis of interatomic Contacts of Structural Units in PDB entry:
5VAZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VAZ entry

There are 2 chains in PDB entry 5VAZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 114LEU 433
B
 PRO 116HIS 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5VAZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
116 135Right-handed alpha
Helix 2
AA2
A
137 147Right-handed alpha
Helix 3
AA3
A
152 158Right-handed alpha
Helix 4
AA4
A
168 175Right-handed alpha
Helix 5
AA5
A
177 187Right-handed alpha
Helix 6
AA6
A
250 258Right-handed alpha
Helix 7
AA7
A
269 279Right-handed alpha
Helix 8
AA8
A
293 302Right-handed alpha
Helix 9
AA9
A
314 329Right-handed alpha
Helix 10
AB1
A
330 332Right-handed 310
Helix 11
AB2
A
348 369Right-handed alpha
Helix 12
AB3
A
372 384Right-handed alpha
Helix 13
AB4
A
388 404Right-handed alpha
Helix 14
AB5
A
408 424Right-handed alpha
Helix 15
AB6
A
426 433Right-handed alpha
Helix 16
AB7
B
117 135Right-handed alpha
Helix 17
AB8
B
139 149Right-handed alpha
Helix 18
AB9
B
153 159Right-handed alpha
Helix 19
AC1
B
168 175Right-handed alpha
Helix 20
AC2
B
177 187Right-handed alpha
Helix 21
AC3
B
250 258Right-handed alpha
Helix 22
AC4
B
269 279Right-handed alpha
Helix 23
AC5
B
293 304Right-handed alpha
Helix 24
AC6
B
314 329Right-handed alpha
Helix 25
AC7
B
330 332Right-handed 310
Helix 26
AC8
B
348 369Right-handed alpha
Helix 27
AC9
B
372 382Right-handed alpha
Helix 28
AD1
B
388 404Right-handed alpha
Helix 29
AD2
B
408 424Right-handed alpha
Helix 30
AD3
B
426 434Right-handed alpha
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There are 6 sheets in PDB entry 5VAZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
206 212anti-parallel
Strand 3
A
218 225anti-parallel
Strand 4
A
233 235anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 192first strand
Strand 2
A
199 201anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 286first strand
Strand 2
A
263 267parallel
Strand 3
A
306 313parallel
Strand 4
A
337 345parallel
Strand 5
A
370 371anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 163first strand
Strand 2
B
206 212anti-parallel
Strand 3
B
218 225anti-parallel
Strand 4
B
233 235anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 192first strand
Strand 2
B
199 201anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 286first strand
Strand 2
B
264 267parallel
Strand 3
B
306 313parallel
Strand 4
B
337 345parallel
Strand 5
B
370 371anti-parallel
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