Analysis of interatomic Contacts of Structural Units in PDB entry:
5VBA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VBA entry

There are 2 chains in PDB entry 5VBA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 995LEU 270
B
 SER 992LEU 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5VBA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1002 1011Right-handed alpha
Helix 2
AA2
A
1038 1051Right-handed alpha
Helix 3
AA3
A
1059 1080Right-handed alpha
Helix 4
AA4
A
1084 1091Right-handed alpha
Helix 5
AA5
A
1092 1113Right-handed alpha
Helix 6
AA6
A
1114 1123Right-handed alpha
Helix 7
AA7
A
1125 1134Right-handed alpha
Helix 8
AA8
A
1136 1142Right-handed alpha
Helix 9
AA9
A
1142 1156Right-handed alpha
Helix 10
AB1
A
1158 1161Right-handed 310
Helix 11
AB2
A
23 34Right-handed alpha
Helix 12
AB3
A
39 43Right-handed 310
Helix 13
AB4
A
52 68Right-handed alpha
Helix 14
AB5
A
78 89Right-handed alpha
Helix 15
AB6
A
140 150Right-handed alpha
Helix 16
AB7
A
164 170Right-handed 310
Helix 17
AB8
A
182 195Right-handed alpha
Helix 18
AB9
A
249 263Right-handed alpha
Helix 19
AC1
B
1002 1011Right-handed alpha
Helix 20
AC2
B
1038 1051Right-handed alpha
Helix 21
AC3
B
1059 1080Right-handed alpha
Helix 22
AC4
B
1084 1091Right-handed alpha
Helix 23
AC5
B
1092 1113Right-handed alpha
Helix 24
AC6
B
1114 1123Right-handed alpha
Helix 25
AC7
B
1125 1134Right-handed alpha
Helix 26
AC8
B
1136 1142Right-handed alpha
Helix 27
AC9
B
1142 1156Right-handed alpha
Helix 28
AD1
B
1158 1161Right-handed 310
Helix 29
AD2
B
23 34Right-handed alpha
Helix 30
AD3
B
39 43Right-handed 310
Helix 31
AD4
B
57 68Right-handed alpha
Helix 32
AD5
B
78 89Right-handed alpha
Helix 33
AD6
B
139 150Right-handed alpha
Helix 34
AD7
B
166 171Right-handed alpha
Helix 35
AD8
B
182 195Right-handed alpha
Helix 36
AD9
B
249 262Right-handed alpha
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There are 6 sheets in PDB entry 5VBA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1014 1019first strand
Strand 2
A
1025 1028anti-parallel
Strand 3
A
1031 1034anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 22first strand
Strand 2
A
129 135anti-parallel
Strand 3
A
119 126anti-parallel
Strand 4
A
109 116anti-parallel
Strand 5
A
93 101anti-parallel
Strand 6
A
198 207anti-parallel
Strand 7
A
213 215anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 22first strand
Strand 2
A
129 135anti-parallel
Strand 3
A
119 126anti-parallel
Strand 4
A
109 116anti-parallel
Strand 5
A
93 101anti-parallel
Strand 6
A
198 207anti-parallel
Strand 7
A
220 224anti-parallel
Strand 8
A
230 237anti-parallel
Strand 9
A
240 247anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1014 1019first strand
Strand 2
B
1025 1028anti-parallel
Strand 3
B
1031 1034anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 22first strand
Strand 2
B
129 135anti-parallel
Strand 3
B
119 126anti-parallel
Strand 4
B
107 116anti-parallel
Strand 5
B
93 101anti-parallel
Strand 6
B
198 207anti-parallel
Strand 7
B
213 215anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 22first strand
Strand 2
B
129 135anti-parallel
Strand 3
B
119 126anti-parallel
Strand 4
B
107 116anti-parallel
Strand 5
B
93 101anti-parallel
Strand 6
B
198 207anti-parallel
Strand 7
B
220 224anti-parallel
Strand 8
B
230 237anti-parallel
Strand 9
B
240 247anti-parallel
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