Analysis of interatomic Contacts of Structural Units in PDB entry:
5VBB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VBB entry

There is 1 chain in PDB entry 5VBB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5VBB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 48Right-handed alpha
Helix 2
AA2
A
79 92Right-handed alpha
Helix 3
AA3
A
174 183Right-handed alpha
Helix 4
AA4
A
246 257Right-handed alpha
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There are 4 sheets in PDB entry 5VBB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
18 23anti-parallel
Strand 3
A
71 77anti-parallel
Strand 4
A
208 216parallel
Strand 5
A
96 104anti-parallel
Strand 6
A
159 168anti-parallel
Strand 7
A
146 156anti-parallel
Strand 8
A
111 114anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 225first strand
Strand 2
A
208 216anti-parallel
Strand 3
A
71 77parallel
Strand 4
A
61 62anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
71 77anti-parallel
Strand 3
A
208 216parallel
Strand 4
A
96 104anti-parallel
Strand 5
A
159 168anti-parallel
Strand 6
A
146 156anti-parallel
Strand 7
A
238 243anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
118 121anti-parallel
Strand 3
A
138 142anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il