Analysis of interatomic Contacts of Structural Units in PDB entry:
5VBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VBG entry

There is 1 chain in PDB entry 5VBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 33ASN 575
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5VBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 40Right-handed 310
Helix 2
AA2
A
45 56Right-handed alpha
Helix 3
AA3
A
58 76Right-handed alpha
Helix 4
AA4
A
78 88Right-handed alpha
Helix 5
AA5
A
93 111Right-handed alpha
Helix 6
AA6
A
113 123Right-handed alpha
Helix 7
AA7
A
125 129Right-handed 310
Helix 8
AA8
A
130 148Right-handed alpha
Helix 9
AA9
A
150 164Right-handed alpha
Helix 10
AB1
A
167 185Right-handed alpha
Helix 11
AB2
A
186 192Right-handed alpha
Helix 12
AB3
A
198 215Right-handed alpha
Helix 13
AB4
A
217 232Right-handed alpha
Helix 14
AB5
A
235 240Right-handed alpha
Helix 15
AB6
A
242 244Right-handed 310
Helix 16
AB7
A
245 250Right-handed alpha
Helix 17
AB8
A
269 285Right-handed alpha
Helix 18
AB9
A
300 311Right-handed alpha
Helix 19
AC1
A
321 331Right-handed alpha
Helix 20
AC2
A
332 336Right-handed 310
Helix 21
AC3
A
361 376Right-handed alpha
Helix 22
AC4
A
388 407Right-handed alpha
Helix 23
AC5
A
419 429Right-handed alpha
Helix 24
AC6
A
440 451Right-handed alpha
Helix 25
AC7
A
464 467Right-handed 310
Helix 26
AC8
A
475 480Right-handed alpha
Helix 27
AC9
A
489 493Right-handed 310
Helix 28
AD1
A
497 507Right-handed alpha
Helix 29
AD2
A
510 529Right-handed alpha
Helix 30
AD3
A
529 536Right-handed alpha
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There are 3 sheets in PDB entry 5VBG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 295first strand
Strand 2
A
259 263parallel
Strand 3
A
315 317parallel
Strand 4
A
339 342parallel
Strand 5
A
355 357parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 415first strand
Strand 2
A
380 386parallel
Strand 3
A
433 437parallel
Strand 4
A
459 462parallel
Strand 5
A
485 488parallel
Strand 6
A
561 566anti-parallel
Strand 7
A
569 574anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 543first strand
Strand 2
A
546 550anti-parallel
Strand 3
A
556 559anti-parallel
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