Analysis of interatomic Contacts of Structural Units in PDB entry:
5VBN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VBN entry

There are 4 chains in PDB entry 5VBN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 84PHE 527
B
 SER 2150PRO 2282
E
 HIS 84PHE 527
F
 SER 2150PRO 2282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5VBN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
92 94Right-handed 310
Helix 2
AA2
A
110 112Right-handed 310
Helix 3
AA3
A
122 143Right-handed alpha
Helix 4
AA4
A
167 174Right-handed alpha
Helix 5
AA5
A
247 256Right-handed alpha
Helix 6
AA6
A
268 271Right-handed 310
Helix 7
AA7
A
272 282Right-handed alpha
Helix 8
AA8
A
297 312Right-handed alpha
Helix 9
AA9
A
333 351Right-handed alpha
Helix 10
AB1
A
352 359Right-handed alpha
Helix 11
AB2
A
382 393Right-handed alpha
Helix 12
AB3
A
418 425Right-handed alpha
Helix 13
AB4
A
436 449Right-handed alpha
Helix 14
AB5
A
462 470Right-handed 310
Helix 15
AB6
A
501 505Right-handed 310
Helix 16
AB7
B
2195 2217Right-handed alpha
Helix 17
AB8
B
2247 2266Right-handed alpha
Helix 18
AB9
B
2267 2280Right-handed alpha
Helix 19
AC1
E
92 94Right-handed 310
Helix 20
AC2
E
110 112Right-handed 310
Helix 21
AC3
E
122 143Right-handed alpha
Helix 22
AC4
E
167 174Right-handed alpha
Helix 23
AC5
E
247 256Right-handed alpha
Helix 24
AC6
E
268 271Right-handed 310
Helix 25
AC7
E
272 282Right-handed alpha
Helix 26
AC8
E
297 312Right-handed alpha
Helix 27
AC9
E
333 351Right-handed alpha
Helix 28
AD1
E
352 359Right-handed alpha
Helix 29
AD2
E
382 393Right-handed alpha
Helix 30
AD3
E
418 425Right-handed alpha
Helix 31
AD4
E
436 449Right-handed alpha
Helix 32
AD5
E
462 470Right-handed 310
Helix 33
AD6
E
501 505Right-handed 310
Helix 34
AD7
F
2195 2217Right-handed alpha
Helix 35
AD8
F
2247 2266Right-handed alpha
Helix 36
AD9
F
2267 2280Right-handed alpha
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There are 12 sheets in PDB entry 5VBN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
403 407anti-parallel
Strand 3
A
410 416anti-parallel
Strand 4
A
477 481parallel
Strand 5
A
494 498parallel
Strand 6
A
487 491anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
105 108anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
234 241parallel
Strand 3
A
223 230anti-parallel
Strand 4
A
178 191anti-parallel
Strand 5
A
194 199anti-parallel
Strand 6
A
202 207anti-parallel
Strand 7
A
234 241parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 398first strand
Strand 2
A
360 364parallel
Strand 3
A
318 322parallel
Strand 4
A
287 290parallel
Strand 5
A
508 513anti-parallel
Strand 6
A
518 523anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2152 2157first strand
Strand 2
B
2164 2168anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2219 2221first strand
Strand 2
B
2242 2244anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
86 90first strand
Strand 2
E
403 407anti-parallel
Strand 3
E
410 416anti-parallel
Strand 4
E
477 481parallel
Strand 5
E
494 498parallel
Strand 6
E
487 491anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
97 100first strand
Strand 2
E
105 108anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
212 213first strand
Strand 2
E
234 241parallel
Strand 3
E
223 230anti-parallel
Strand 4
E
178 191anti-parallel
Strand 5
E
194 199anti-parallel
Strand 6
E
202 207anti-parallel
Strand 7
E
234 241parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
396 398first strand
Strand 2
E
360 364parallel
Strand 3
E
318 322parallel
Strand 4
E
287 290parallel
Strand 5
E
508 513anti-parallel
Strand 6
E
518 523anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2152 2157first strand
Strand 2
F
2164 2168anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2219 2221first strand
Strand 2
F
2242 2244anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il