Analysis of interatomic Contacts of Structural Units in PDB entry:
5VBU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VBU entry

There are 3 chains in PDB entry 5VBU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 29GLY 485
B
 LYS 29ARG 484
C
 LYS 29ASP 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 5VBU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 42Right-handed 310
Helix 2
AA2
A
44 52Right-handed alpha
Helix 3
AA3
A
52 57Right-handed alpha
Helix 4
AA4
A
74 83Right-handed alpha
Helix 5
AA5
A
95 101Right-handed alpha
Helix 6
AA6
A
114 130Right-handed alpha
Helix 7
AA7
A
135 153Right-handed alpha
Helix 8
AA8
A
160 179Right-handed alpha
Helix 9
AA9
A
180 183Right-handed 310
Helix 10
AB1
A
187 204Right-handed alpha
Helix 11
AB2
A
204 213Right-handed alpha
Helix 12
AB3
A
214 219Right-handed 310
Helix 13
AB4
A
223 249Right-handed alpha
Helix 14
AB5
A
256 264Right-handed alpha
Helix 15
AB6
A
278 293Right-handed alpha
Helix 16
AB7
A
294 311Right-handed alpha
Helix 17
AB8
A
311 325Right-handed alpha
Helix 18
AB9
A
336 342Right-handed 310
Helix 19
AC1
A
343 357Right-handed alpha
Helix 20
AC2
A
388 393Right-handed alpha
Helix 21
AC3
A
406 411Right-handed 310
Helix 22
AC4
A
424 428Right-handed 310
Helix 23
AC5
A
431 450Right-handed alpha
Helix 24
AC6
B
38 42Right-handed 310
Helix 25
AC7
B
44 52Right-handed alpha
Helix 26
AC8
B
52 57Right-handed alpha
Helix 27
AC9
B
74 83Right-handed alpha
Helix 28
AD1
B
95 102Right-handed alpha
Helix 29
AD2
B
114 130Right-handed alpha
Helix 30
AD3
B
135 153Right-handed alpha
Helix 31
AD4
B
160 179Right-handed alpha
Helix 32
AD5
B
180 183Right-handed 310
Helix 33
AD6
B
187 203Right-handed alpha
Helix 34
AD7
B
204 213Right-handed alpha
Helix 35
AD8
B
214 219Right-handed 310
Helix 36
AD9
B
223 249Right-handed alpha
Helix 37
AE1
B
256 264Right-handed alpha
Helix 38
AE2
B
278 293Right-handed alpha
Helix 39
AE3
B
294 311Right-handed alpha
Helix 40
AE4
B
311 325Right-handed alpha
Helix 41
AE5
B
336 342Right-handed 310
Helix 42
AE6
B
343 357Right-handed alpha
Helix 43
AE7
B
388 393Right-handed alpha
Helix 44
AE8
B
406 411Right-handed 310
Helix 45
AE9
B
431 450Right-handed alpha
Helix 46
AF1
C
38 42Right-handed 310
Helix 47
AF2
C
44 52Right-handed alpha
Helix 48
AF3
C
52 57Right-handed alpha
Helix 49
AF4
C
74 83Right-handed alpha
Helix 50
AF5
C
95 102Right-handed alpha
Helix 51
AF6
C
114 130Right-handed alpha
Helix 52
AF7
C
135 154Right-handed alpha
Helix 53
AF8
C
160 179Right-handed alpha
Helix 54
AF9
C
180 184Right-handed 310
Helix 55
AG1
C
187 203Right-handed alpha
Helix 56
AG2
C
204 213Right-handed alpha
Helix 57
AG3
C
214 219Right-handed 310
Helix 58
AG4
C
223 249Right-handed alpha
Helix 59
AG5
C
256 264Right-handed alpha
Helix 60
AG6
C
278 293Right-handed alpha
Helix 61
AG7
C
294 311Right-handed alpha
Helix 62
AG8
C
311 325Right-handed alpha
Helix 63
AG9
C
336 342Right-handed 310
Helix 64
AH1
C
343 357Right-handed alpha
Helix 65
AH2
C
388 393Right-handed alpha
Helix 66
AH3
C
406 411Right-handed 310
Helix 67
AH4
C
424 428Right-handed 310
Helix 68
AH5
C
431 450Right-handed alpha
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There are 9 sheets in PDB entry 5VBU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
59 64parallel
Strand 3
A
67 72anti-parallel
Strand 4
A
384 387parallel
Strand 5
A
366 367anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
479 482anti-parallel
Strand 3
A
451 454anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 374first strand
Strand 2
A
377 379anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
59 64parallel
Strand 3
B
67 72anti-parallel
Strand 4
B
384 387parallel
Strand 5
B
366 367anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
479 482anti-parallel
Strand 3
B
451 454anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
372 374first strand
Strand 2
B
377 379anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 64first strand
Strand 2
C
67 72anti-parallel
Strand 3
C
384 387parallel
Strand 4
C
366 367anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
372 374first strand
Strand 2
C
377 379anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
451 454first strand
Strand 2
C
479 482anti-parallel
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