Analysis of interatomic Contacts of Structural Units in PDB entry:
5VC2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VC2 entry

There are 2 chains in PDB entry 5VC2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 3PHE 416
B
 ALA 2PHE 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 5VC2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 9Right-handed alpha
Helix 2
AA2
A
9 26Right-handed alpha
Helix 3
AA3
A
37 45Right-handed alpha
Helix 4
AA4
A
46 51Right-handed 310
Helix 5
AA5
A
69 84Right-handed alpha
Helix 6
AA6
A
94 107Right-handed alpha
Helix 7
AA7
A
151 163Right-handed alpha
Helix 8
AA8
A
179 191Right-handed alpha
Helix 9
AA9
A
201 206Right-handed alpha
Helix 10
AB1
A
225 229Right-handed 310
Helix 11
AB2
A
240 251Right-handed alpha
Helix 12
AB3
A
260 276Right-handed alpha
Helix 13
AB4
A
276 300Right-handed alpha
Helix 14
AB5
A
306 308Right-handed 310
Helix 15
AB6
A
324 335Right-handed alpha
Helix 16
AB7
A
361 367Right-handed alpha
Helix 17
AB8
A
370 386Right-handed alpha
Helix 18
AB9
A
390 406Right-handed alpha
Helix 19
AC1
B
3 9Right-handed alpha
Helix 20
AC2
B
9 26Right-handed alpha
Helix 21
AC3
B
37 45Right-handed alpha
Helix 22
AC4
B
46 51Right-handed 310
Helix 23
AC5
B
69 84Right-handed alpha
Helix 24
AC6
B
94 107Right-handed alpha
Helix 25
AC7
B
151 163Right-handed alpha
Helix 26
AC8
B
179 191Right-handed alpha
Helix 27
AC9
B
201 206Right-handed alpha
Helix 28
AD1
B
225 229Right-handed 310
Helix 29
AD2
B
240 252Right-handed alpha
Helix 30
AD3
B
260 275Right-handed alpha
Helix 31
AD4
B
276 300Right-handed alpha
Helix 32
AD5
B
306 308Right-handed 310
Helix 33
AD6
B
324 335Right-handed alpha
Helix 34
AD7
B
361 367Right-handed alpha
Helix 35
AD8
B
370 386Right-handed alpha
Helix 36
AD9
B
390 408Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5VC2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
337 338parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
234 238anti-parallel
Strand 3
A
219 223anti-parallel
Strand 4
A
193 197parallel
Strand 5
A
166 169parallel
Strand 6
A
112 116parallel
Strand 7
A
136 142parallel
Strand 8
A
131 132anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
313 317anti-parallel
Strand 3
A
356 360anti-parallel
Strand 4
A
340 342anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
337 338parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 89first strand
Strand 2
B
234 238anti-parallel
Strand 3
B
219 223anti-parallel
Strand 4
B
193 197parallel
Strand 5
B
166 169parallel
Strand 6
B
112 116parallel
Strand 7
B
138 142parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 304first strand
Strand 2
B
313 317anti-parallel
Strand 3
B
356 360anti-parallel
Strand 4
B
340 341anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il