Analysis of interatomic Contacts of Structural Units in PDB entry:
5VC7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VC7 entry

There are 6 chains in PDB entry 5VC7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 183	THR 726
C	GLU 183	THR 726
D	GLU 183	THR 726
E	GLU 183	THR 726
F	GLU 183	THR 726
G	GLU 183	THR 726

There are168 helices in PDB entry 5VC7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	188	192	Right-handed 310
Helix 2	AA2	A	195	212	Right-handed alpha
Helix 3	AA3	A	213	219	Right-handed alpha
Helix 4	AA4	A	236	249	Right-handed alpha
Helix 5	AA5	A	257	261	Right-handed alpha
Helix 6	AA6	A	267	282	Right-handed alpha
Helix 7	AA7	A	304	321	Right-handed alpha
Helix 8	AA8	A	341	345	Right-handed 310
Helix 9	AA9	A	359	371	Right-handed alpha
Helix 10	AB1	A	380	393	Right-handed alpha
Helix 11	AB2	A	398	418	Right-handed alpha
Helix 12	AB3	A	419	422	Right-handed 310
Helix 13	AB4	A	438	446	Right-handed alpha
Helix 14	AB5	A	465	469	Right-handed 310
Helix 15	AB6	A	472	489	Right-handed alpha
Helix 16	AB7	A	489	495	Right-handed alpha
Helix 17	AB8	A	513	525	Right-handed alpha
Helix 18	AB9	A	534	540	Right-handed alpha
Helix 19	AC1	A	547	560	Right-handed alpha
Helix 20	AC2	A	568	573	Right-handed alpha
Helix 21	AC3	A	581	586	Right-handed alpha
Helix 22	AC4	A	588	599	Right-handed alpha
Helix 23	AC5	A	618	623	Right-handed 310
Helix 24	AC6	A	637	650	Right-handed alpha
Helix 25	AC7	A	660	667	Right-handed alpha
Helix 26	AC8	A	671	690	Right-handed alpha
Helix 27	AC9	A	697	706	Right-handed alpha
Helix 28	AD1	A	713	724	Right-handed alpha
Helix 29	AD2	C	188	192	Right-handed 310
Helix 30	AD3	C	195	212	Right-handed alpha
Helix 31	AD4	C	213	219	Right-handed alpha
Helix 32	AD5	C	236	249	Right-handed alpha
Helix 33	AD6	C	257	261	Right-handed alpha
Helix 34	AD7	C	267	282	Right-handed alpha
Helix 35	AD8	C	304	321	Right-handed alpha
Helix 36	AD9	C	341	345	Right-handed 310
Helix 37	AE1	C	359	371	Right-handed alpha
Helix 38	AE2	C	380	393	Right-handed alpha
Helix 39	AE3	C	398	418	Right-handed alpha
Helix 40	AE4	C	419	422	Right-handed 310
Helix 41	AE5	C	438	446	Right-handed alpha
Helix 42	AE6	C	465	469	Right-handed 310
Helix 43	AE7	C	472	489	Right-handed alpha
Helix 44	AE8	C	489	495	Right-handed alpha
Helix 45	AE9	C	513	525	Right-handed alpha
Helix 46	AF1	C	534	540	Right-handed alpha
Helix 47	AF2	C	547	560	Right-handed alpha
Helix 48	AF3	C	568	573	Right-handed alpha
Helix 49	AF4	C	581	586	Right-handed alpha
Helix 50	AF5	C	588	599	Right-handed alpha
Helix 51	AF6	C	618	623	Right-handed 310
Helix 52	AF7	C	637	650	Right-handed alpha
Helix 53	AF8	C	660	667	Right-handed alpha
Helix 54	AF9	C	671	690	Right-handed alpha
Helix 55	AG1	C	697	706	Right-handed alpha
Helix 56	AG2	C	713	724	Right-handed alpha
Helix 57	AG3	D	188	192	Right-handed 310
Helix 58	AG4	D	195	212	Right-handed alpha
Helix 59	AG5	D	213	219	Right-handed alpha
Helix 60	AG6	D	236	249	Right-handed alpha
Helix 61	AG7	D	257	261	Right-handed alpha
Helix 62	AG8	D	267	282	Right-handed alpha
Helix 63	AG9	D	304	321	Right-handed alpha
Helix 64	AH1	D	341	345	Right-handed 310
Helix 65	AH2	D	359	371	Right-handed alpha
Helix 66	AH3	D	380	393	Right-handed alpha
Helix 67	AH4	D	398	418	Right-handed alpha
Helix 68	AH5	D	419	422	Right-handed 310
Helix 69	AH6	D	438	446	Right-handed alpha
Helix 70	AH7	D	465	469	Right-handed 310
Helix 71	AH8	D	472	489	Right-handed alpha
Helix 72	AH9	D	489	495	Right-handed alpha
Helix 73	AI1	D	513	525	Right-handed alpha
Helix 74	AI2	D	534	540	Right-handed alpha
Helix 75	AI3	D	547	560	Right-handed alpha
Helix 76	AI4	D	568	573	Right-handed alpha
Helix 77	AI5	D	581	586	Right-handed alpha
Helix 78	AI6	D	588	599	Right-handed alpha
Helix 79	AI7	D	618	623	Right-handed 310
Helix 80	AI8	D	637	650	Right-handed alpha
Helix 81	AI9	D	660	667	Right-handed alpha
Helix 82	AJ1	D	671	690	Right-handed alpha
Helix 83	AJ2	D	697	706	Right-handed alpha
Helix 84	AJ3	D	713	724	Right-handed alpha
Helix 85	AJ4	E	188	192	Right-handed 310
Helix 86	AJ5	E	195	212	Right-handed alpha
Helix 87	AJ6	E	213	219	Right-handed alpha
Helix 88	AJ7	E	236	249	Right-handed alpha
Helix 89	AJ8	E	257	261	Right-handed alpha
Helix 90	AJ9	E	267	282	Right-handed alpha
Helix 91	AK1	E	304	321	Right-handed alpha
Helix 92	AK2	E	341	345	Right-handed 310
Helix 93	AK3	E	359	371	Right-handed alpha
Helix 94	AK4	E	380	393	Right-handed alpha
Helix 95	AK5	E	398	418	Right-handed alpha
Helix 96	AK6	E	419	422	Right-handed 310
Helix 97	AK7	E	438	446	Right-handed alpha
Helix 98	AK8	E	465	469	Right-handed 310
Helix 99	AK9	E	472	489	Right-handed alpha
Helix 100	AL1	E	489	495	Right-handed alpha
Helix 101	AL2	E	513	525	Right-handed alpha
Helix 102	AL3	E	534	540	Right-handed alpha
Helix 103	AL4	E	547	560	Right-handed alpha
Helix 104	AL5	E	568	573	Right-handed alpha
Helix 105	AL6	E	581	586	Right-handed alpha
Helix 106	AL7	E	588	599	Right-handed alpha
Helix 107	AL8	E	618	623	Right-handed 310
Helix 108	AL9	E	637	650	Right-handed alpha
Helix 109	AM1	E	660	667	Right-handed alpha
Helix 110	AM2	E	671	690	Right-handed alpha
Helix 111	AM3	E	697	706	Right-handed alpha
Helix 112	AM4	E	713	724	Right-handed alpha
Helix 113	AM5	F	188	192	Right-handed 310
Helix 114	AM6	F	195	212	Right-handed alpha
Helix 115	AM7	F	213	219	Right-handed alpha
Helix 116	AM8	F	236	249	Right-handed alpha
Helix 117	AM9	F	257	261	Right-handed alpha
Helix 118	AN1	F	267	282	Right-handed alpha
Helix 119	AN2	F	304	321	Right-handed alpha
Helix 120	AN3	F	341	345	Right-handed 310
Helix 121	AN4	F	359	371	Right-handed alpha
Helix 122	AN5	F	380	393	Right-handed alpha
Helix 123	AN6	F	398	418	Right-handed alpha
Helix 124	AN7	F	419	422	Right-handed 310
Helix 125	AN8	F	438	446	Right-handed alpha
Helix 126	AN9	F	465	469	Right-handed 310
Helix 127	AO1	F	472	489	Right-handed alpha
Helix 128	AO2	F	489	495	Right-handed alpha
Helix 129	AO3	F	513	525	Right-handed alpha
Helix 130	AO4	F	534	540	Right-handed alpha
Helix 131	AO5	F	547	560	Right-handed alpha
Helix 132	AO6	F	568	573	Right-handed alpha
Helix 133	AO7	F	581	586	Right-handed alpha
Helix 134	AO8	F	588	599	Right-handed alpha
Helix 135	AO9	F	618	623	Right-handed 310
Helix 136	AP1	F	637	650	Right-handed alpha
Helix 137	AP2	F	660	667	Right-handed alpha
Helix 138	AP3	F	671	690	Right-handed alpha
Helix 139	AP4	F	697	706	Right-handed alpha
Helix 140	AP5	F	713	724	Right-handed alpha
Helix 141	AP6	G	188	192	Right-handed 310
Helix 142	AP7	G	195	212	Right-handed alpha
Helix 143	AP8	G	213	219	Right-handed alpha
Helix 144	AP9	G	236	249	Right-handed alpha
Helix 145	AQ1	G	257	261	Right-handed alpha
Helix 146	AQ2	G	267	282	Right-handed alpha
Helix 147	AQ3	G	304	321	Right-handed alpha
Helix 148	AQ4	G	341	345	Right-handed 310
Helix 149	AQ5	G	359	371	Right-handed alpha
Helix 150	AQ6	G	380	393	Right-handed alpha
Helix 151	AQ7	G	398	418	Right-handed alpha
Helix 152	AQ8	G	419	422	Right-handed 310
Helix 153	AQ9	G	438	446	Right-handed alpha
Helix 154	AR1	G	465	469	Right-handed 310
Helix 155	AR2	G	472	489	Right-handed alpha
Helix 156	AR3	G	489	495	Right-handed alpha
Helix 157	AR4	G	513	525	Right-handed alpha
Helix 158	AR5	G	534	540	Right-handed alpha
Helix 159	AR6	G	547	560	Right-handed alpha
Helix 160	AR7	G	568	573	Right-handed alpha
Helix 161	AR8	G	581	586	Right-handed alpha
Helix 162	AR9	G	588	599	Right-handed alpha
Helix 163	AS1	G	618	623	Right-handed 310
Helix 164	AS2	G	637	650	Right-handed alpha
Helix 165	AS3	G	660	667	Right-handed alpha
Helix 166	AS4	G	671	690	Right-handed alpha
Helix 167	AS5	G	697	706	Right-handed alpha
Helix 168	AS6	G	713	724	Right-handed alpha

There are 18 sheets in PDB entry 5VC7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	333	first strand
Strand 2	A	227	230	parallel
Strand 3	A	351	353	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	289	290	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	533	first strand
Strand 2	A	562	567	parallel
Strand 3	A	605	611	parallel
Strand 4	A	503	507	parallel
Strand 5	A	629	632	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	333	first strand
Strand 2	C	227	230	parallel
Strand 3	C	351	353	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	256	first strand
Strand 2	C	289	290	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	528	533	first strand
Strand 2	C	562	567	parallel
Strand 3	C	605	611	parallel
Strand 4	C	503	507	parallel
Strand 5	C	629	632	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	333	first strand
Strand 2	D	227	230	parallel
Strand 3	D	351	353	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	256	first strand
Strand 2	D	289	290	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	528	533	first strand
Strand 2	D	562	567	parallel
Strand 3	D	605	611	parallel
Strand 4	D	503	507	parallel
Strand 5	D	629	632	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	332	333	first strand
Strand 2	E	227	230	parallel
Strand 3	E	351	353	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	255	256	first strand
Strand 2	E	289	290	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	528	533	first strand
Strand 2	E	562	567	parallel
Strand 3	E	605	611	parallel
Strand 4	E	503	507	parallel
Strand 5	E	629	632	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	332	333	first strand
Strand 2	F	227	230	parallel
Strand 3	F	351	353	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	255	256	first strand
Strand 2	F	289	290	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	528	533	first strand
Strand 2	F	562	567	parallel
Strand 3	F	605	611	parallel
Strand 4	F	503	507	parallel
Strand 5	F	629	632	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	332	333	first strand
Strand 2	G	227	230	parallel
Strand 3	G	351	353	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	255	256	first strand
Strand 2	G	289	290	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	528	533	first strand
Strand 2	G	562	567	parallel
Strand 3	G	605	611	parallel
Strand 4	G	503	507	parallel
Strand 5	G	629	632	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VC7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VC7