Analysis of interatomic Contacts of Structural Units in PDB entry:
5VCA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VCA entry

There are 6 chains in PDB entry 5VCA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	GLU 183	THR 726
M	GLU 183	THR 726
N	GLU 183	THR 726
O	GLU 183	THR 726
Q	GLU 183	THR 726
R	GLU 183	THR 726

There are175 helices in PDB entry 5VCA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	P	188	193	Right-handed alpha
Helix 2	AA2	P	195	206	Right-handed alpha
Helix 3	AA3	P	206	212	Right-handed alpha
Helix 4	AA4	P	213	219	Right-handed alpha
Helix 5	AA5	P	236	249	Right-handed alpha
Helix 6	AA6	P	256	261	Right-handed alpha
Helix 7	AA7	P	266	283	Right-handed alpha
Helix 8	AA8	P	291	296	Right-handed alpha
Helix 9	AA9	P	304	320	Right-handed alpha
Helix 10	AB1	P	340	345	Right-handed alpha
Helix 11	AB2	P	359	372	Right-handed alpha
Helix 12	AB3	P	380	393	Right-handed alpha
Helix 13	AB4	P	398	417	Right-handed alpha
Helix 14	AB5	P	417	422	Right-handed alpha
Helix 15	AB6	P	438	447	Right-handed alpha
Helix 16	AB7	P	465	469	Right-handed 310
Helix 17	AB8	P	472	489	Right-handed alpha
Helix 18	AB9	P	490	497	Right-handed alpha
Helix 19	AC1	P	513	525	Right-handed alpha
Helix 20	AC2	P	533	540	Right-handed alpha
Helix 21	AC3	P	546	560	Right-handed alpha
Helix 22	AC4	P	568	573	Right-handed alpha
Helix 23	AC5	P	583	598	Right-handed alpha
Helix 24	AC6	P	613	617	Right-handed 310
Helix 25	AC7	P	618	623	Right-handed 310
Helix 26	AC8	P	637	649	Right-handed alpha
Helix 27	AC9	P	659	667	Right-handed alpha
Helix 28	AD1	P	671	690	Right-handed alpha
Helix 29	AD2	P	697	706	Right-handed alpha
Helix 30	AD3	P	713	724	Right-handed alpha
Helix 31	AD4	M	195	206	Right-handed alpha
Helix 32	AD5	M	206	212	Right-handed alpha
Helix 33	AD6	M	213	219	Right-handed alpha
Helix 34	AD7	M	236	243	Right-handed alpha
Helix 35	AD8	M	256	261	Right-handed alpha
Helix 36	AD9	M	267	283	Right-handed alpha
Helix 37	AE1	M	304	320	Right-handed alpha
Helix 38	AE2	M	340	345	Right-handed alpha
Helix 39	AE3	M	359	371	Right-handed alpha
Helix 40	AE4	M	380	394	Right-handed alpha
Helix 41	AE5	M	398	417	Right-handed alpha
Helix 42	AE6	M	417	422	Right-handed alpha
Helix 43	AE7	M	438	446	Right-handed alpha
Helix 44	AE8	M	465	469	Right-handed 310
Helix 45	AE9	M	472	489	Right-handed alpha
Helix 46	AF1	M	489	497	Right-handed alpha
Helix 47	AF2	M	513	525	Right-handed alpha
Helix 48	AF3	M	533	540	Right-handed alpha
Helix 49	AF4	M	546	560	Right-handed alpha
Helix 50	AF5	M	568	573	Right-handed alpha
Helix 51	AF6	M	583	598	Right-handed alpha
Helix 52	AF7	M	613	617	Right-handed 310
Helix 53	AF8	M	618	623	Right-handed 310
Helix 54	AF9	M	637	650	Right-handed alpha
Helix 55	AG1	M	659	665	Right-handed alpha
Helix 56	AG2	M	671	690	Right-handed alpha
Helix 57	AG3	M	697	706	Right-handed alpha
Helix 58	AG4	M	713	724	Right-handed alpha
Helix 59	AG5	N	195	206	Right-handed alpha
Helix 60	AG6	N	206	212	Right-handed alpha
Helix 61	AG7	N	213	219	Right-handed alpha
Helix 62	AG8	N	236	246	Right-handed alpha
Helix 63	AG9	N	256	261	Right-handed alpha
Helix 64	AH1	N	267	283	Right-handed alpha
Helix 65	AH2	N	304	320	Right-handed alpha
Helix 66	AH3	N	340	345	Right-handed alpha
Helix 67	AH4	N	359	372	Right-handed alpha
Helix 68	AH5	N	380	393	Right-handed alpha
Helix 69	AH6	N	398	417	Right-handed alpha
Helix 70	AH7	N	417	422	Right-handed alpha
Helix 71	AH8	N	438	447	Right-handed alpha
Helix 72	AH9	N	465	469	Right-handed 310
Helix 73	AI1	N	472	489	Right-handed alpha
Helix 74	AI2	N	489	497	Right-handed alpha
Helix 75	AI3	N	513	525	Right-handed alpha
Helix 76	AI4	N	534	540	Right-handed alpha
Helix 77	AI5	N	546	560	Right-handed alpha
Helix 78	AI6	N	568	573	Right-handed alpha
Helix 79	AI7	N	583	597	Right-handed alpha
Helix 80	AI8	N	613	617	Right-handed 310
Helix 81	AI9	N	618	623	Right-handed 310
Helix 82	AJ1	N	637	650	Right-handed alpha
Helix 83	AJ2	N	659	667	Right-handed alpha
Helix 84	AJ3	N	671	690	Right-handed alpha
Helix 85	AJ4	N	697	706	Right-handed alpha
Helix 86	AJ5	N	713	724	Right-handed alpha
Helix 87	AJ6	O	195	206	Right-handed alpha
Helix 88	AJ7	O	206	212	Right-handed alpha
Helix 89	AJ8	O	213	219	Right-handed alpha
Helix 90	AJ9	O	236	243	Right-handed alpha
Helix 91	AK1	O	256	261	Right-handed alpha
Helix 92	AK2	O	266	283	Right-handed alpha
Helix 93	AK3	O	304	320	Right-handed alpha
Helix 94	AK4	O	340	345	Right-handed 310
Helix 95	AK5	O	359	372	Right-handed alpha
Helix 96	AK6	O	380	393	Right-handed alpha
Helix 97	AK7	O	398	417	Right-handed alpha
Helix 98	AK8	O	417	422	Right-handed alpha
Helix 99	AK9	O	438	447	Right-handed alpha
Helix 100	AL1	O	465	469	Right-handed 310
Helix 101	AL2	O	472	489	Right-handed alpha
Helix 102	AL3	O	489	497	Right-handed alpha
Helix 103	AL4	O	513	525	Right-handed alpha
Helix 104	AL5	O	533	539	Right-handed alpha
Helix 105	AL6	O	546	560	Right-handed alpha
Helix 106	AL7	O	568	573	Right-handed alpha
Helix 107	AL8	O	582	598	Right-handed alpha
Helix 108	AL9	O	613	617	Right-handed 310
Helix 109	AM1	O	618	623	Right-handed 310
Helix 110	AM2	O	637	650	Right-handed alpha
Helix 111	AM3	O	659	667	Right-handed alpha
Helix 112	AM4	O	671	690	Right-handed alpha
Helix 113	AM5	O	697	706	Right-handed alpha
Helix 114	AM6	O	713	724	Right-handed alpha
Helix 115	AM7	Q	188	192	Right-handed 310
Helix 116	AM8	Q	195	206	Right-handed alpha
Helix 117	AM9	Q	206	212	Right-handed alpha
Helix 118	AN1	Q	213	219	Right-handed alpha
Helix 119	AN2	Q	236	243	Right-handed alpha
Helix 120	AN3	Q	243	249	Right-handed alpha
Helix 121	AN4	Q	256	261	Right-handed alpha
Helix 122	AN5	Q	267	282	Right-handed alpha
Helix 123	AN6	Q	291	296	Right-handed alpha
Helix 124	AN7	Q	304	321	Right-handed alpha
Helix 125	AN8	Q	335	339	Right-handed 310
Helix 126	AN9	Q	340	345	Right-handed alpha
Helix 127	AO1	Q	359	374	Right-handed alpha
Helix 128	AO2	Q	380	393	Right-handed alpha
Helix 129	AO3	Q	398	417	Right-handed alpha
Helix 130	AO4	Q	417	422	Right-handed alpha
Helix 131	AO5	Q	438	447	Right-handed alpha
Helix 132	AO6	Q	465	469	Right-handed 310
Helix 133	AO7	Q	472	489	Right-handed alpha
Helix 134	AO8	Q	489	497	Right-handed alpha
Helix 135	AO9	Q	513	525	Right-handed alpha
Helix 136	AP1	Q	533	539	Right-handed alpha
Helix 137	AP2	Q	546	560	Right-handed alpha
Helix 138	AP3	Q	568	573	Right-handed alpha
Helix 139	AP4	Q	583	598	Right-handed alpha
Helix 140	AP5	Q	613	617	Right-handed 310
Helix 141	AP6	Q	618	623	Right-handed 310
Helix 142	AP7	Q	637	650	Right-handed alpha
Helix 143	AP8	Q	659	667	Right-handed alpha
Helix 144	AP9	Q	671	690	Right-handed alpha
Helix 145	AQ1	Q	697	706	Right-handed alpha
Helix 146	AQ2	Q	713	724	Right-handed alpha
Helix 147	AQ3	R	195	206	Right-handed alpha
Helix 148	AQ4	R	206	212	Right-handed alpha
Helix 149	AQ5	R	213	219	Right-handed alpha
Helix 150	AQ6	R	236	243	Right-handed alpha
Helix 151	AQ7	R	244	248	Right-handed 310
Helix 152	AQ8	R	256	261	Right-handed alpha
Helix 153	AQ9	R	267	282	Right-handed alpha
Helix 154	AR1	R	304	320	Right-handed alpha
Helix 155	AR2	R	340	345	Right-handed alpha
Helix 156	AR3	R	359	372	Right-handed alpha
Helix 157	AR4	R	380	393	Right-handed alpha
Helix 158	AR5	R	398	417	Right-handed alpha
Helix 159	AR6	R	417	422	Right-handed alpha
Helix 160	AR7	R	438	447	Right-handed alpha
Helix 161	AR8	R	465	469	Right-handed 310
Helix 162	AR9	R	472	489	Right-handed alpha
Helix 163	AS1	R	489	497	Right-handed alpha
Helix 164	AS2	R	513	525	Right-handed alpha
Helix 165	AS3	R	534	539	Right-handed alpha
Helix 166	AS4	R	546	560	Right-handed alpha
Helix 167	AS5	R	568	573	Right-handed alpha
Helix 168	AS6	R	583	598	Right-handed alpha
Helix 169	AS7	R	613	617	Right-handed 310
Helix 170	AS8	R	618	623	Right-handed 310
Helix 171	AS9	R	637	649	Right-handed alpha
Helix 172	AT1	R	660	667	Right-handed alpha
Helix 173	AT2	R	671	690	Right-handed alpha
Helix 174	AT3	R	697	706	Right-handed alpha
Helix 175	AT4	R	713	724	Right-handed alpha

There are 13 sheets in PDB entry 5VCA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	251	254	first strand
Strand 2	P	285	288	parallel
Strand 3	P	327	333	parallel
Strand 4	P	226	230	parallel
Strand 5	P	351	354	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	504	507	first strand
Strand 2	P	629	632	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	528	531	first strand
Strand 2	P	562	567	parallel
Strand 3	P	605	610	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	251	254	first strand
Strand 2	M	285	288	parallel
Strand 3	M	327	332	parallel
Strand 4	M	227	230	parallel
Strand 5	M	353	354	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	528	531	first strand
Strand 2	M	562	566	parallel
Strand 3	M	605	610	parallel
Strand 4	M	503	507	parallel
Strand 5	M	629	632	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	253	254	first strand
Strand 2	N	286	288	parallel
Strand 3	N	328	333	parallel
Strand 4	N	227	230	parallel
Strand 5	N	353	354	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	528	533	first strand
Strand 2	N	562	567	parallel
Strand 3	N	607	611	parallel
Strand 4	N	503	507	parallel
Strand 5	N	629	632	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	251	254	first strand
Strand 2	O	285	288	parallel
Strand 3	O	328	332	parallel
Strand 4	O	227	230	parallel
Strand 5	O	353	354	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	529	531	first strand
Strand 2	O	562	565	parallel
Strand 3	O	605	611	parallel
Strand 4	O	503	507	parallel
Strand 5	O	629	632	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	251	254	first strand
Strand 2	Q	285	288	parallel
Strand 3	Q	327	332	parallel
Strand 4	Q	227	230	parallel
Strand 5	Q	353	354	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	528	531	first strand
Strand 2	Q	562	566	parallel
Strand 3	Q	607	611	parallel
Strand 4	Q	503	507	parallel
Strand 5	Q	629	632	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	251	254	first strand
Strand 2	R	285	288	parallel
Strand 3	R	327	333	parallel
Strand 4	R	226	230	parallel
Strand 5	R	351	354	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	528	533	first strand
Strand 2	R	562	567	parallel
Strand 3	R	607	611	parallel
Strand 4	R	504	507	parallel
Strand 5	R	629	632	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VCA

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VCA