Analysis of interatomic Contacts of Structural Units in PDB entry:
5VCD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VCD entry

There is 1 chain in PDB entry 5VCD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 26ARG 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5VCD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 30Right-handed 310
Helix 2
AA2
A
31 36Right-handed alpha
Helix 3
AA3
A
49 54Right-handed 310
Helix 4
AA4
A
55 69Right-handed alpha
Helix 5
AA5
A
86 95Right-handed alpha
Helix 6
AA6
A
112 117Right-handed 310
Helix 7
AA7
A
122 134Right-handed alpha
Helix 8
AA8
A
135 137Right-handed 310
Helix 9
AA9
A
138 166Right-handed alpha
Helix 10
AB1
A
172 189Right-handed alpha
Helix 11
AB2
A
201 208Right-handed alpha
Helix 12
AB3
A
217 226Right-handed alpha
Helix 13
AB4
A
229 236Right-handed alpha
Helix 14
AB5
A
242 261Right-handed alpha
Helix 15
AB6
A
270 280Right-handed alpha
Helix 16
AB7
A
291 324Right-handed alpha
Helix 17
AB8
A
324 339Right-handed alpha
Helix 18
AB9
A
340 343Right-handed 310
Helix 19
AC1
A
346 351Right-handed alpha
Helix 20
AC2
A
353 367Right-handed alpha
Helix 21
AC3
A
397 403Right-handed alpha
Helix 22
AC4
A
415 420Right-handed 310
Helix 23
AC5
A
423 427Right-handed 310
Helix 24
AC6
A
444 462Right-handed alpha
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There are 3 sheets in PDB entry 5VCD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 76first strand
Strand 2
A
79 84anti-parallel
Strand 3
A
393 396parallel
Strand 4
A
373 376anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
490 495anti-parallel
Strand 3
A
463 467anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
386 388anti-parallel
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