Analysis of interatomic Contacts of Structural Units in PDB entry:
5VCH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VCH entry

There are 2 chains in PDB entry 5VCH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 40ALA 1113
B
 LEU 41GLU 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are123 helices in PDB entry 5VCH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 51Right-handed alpha
Helix 2
AA2
A
53 68Right-handed alpha
Helix 3
AA3
A
80 94Right-handed alpha
Helix 4
AA4
A
96 113Right-handed alpha
Helix 5
AA5
A
122 131Right-handed alpha
Helix 6
AA6
A
135 152Right-handed alpha
Helix 7
AA7
A
153 159Right-handed 310
Helix 8
AA8
A
160 172Right-handed alpha
Helix 9
AA9
A
177 196Right-handed alpha
Helix 10
AB1
A
202 226Right-handed alpha
Helix 11
AB2
A
228 244Right-handed alpha
Helix 12
AB3
A
246 251Right-handed alpha
Helix 13
AB4
A
253 267Right-handed alpha
Helix 14
AB5
A
271 297Right-handed alpha
Helix 15
AB6
A
298 312Right-handed alpha
Helix 16
AB7
A
315 322Right-handed alpha
Helix 17
AB8
A
333 349Right-handed alpha
Helix 18
AB9
A
350 353Right-handed 310
Helix 19
AC1
A
354 368Right-handed alpha
Helix 20
AC2
A
370 385Right-handed alpha
Helix 21
AC3
A
388 395Right-handed alpha
Helix 22
AC4
A
395 408Right-handed alpha
Helix 23
AC5
A
411 429Right-handed alpha
Helix 24
AC6
A
429 435Right-handed alpha
Helix 25
AC7
A
436 450Right-handed alpha
Helix 26
AC8
A
453 470Right-handed alpha
Helix 27
AC9
A
472 494Right-handed alpha
Helix 28
AD1
A
496 515Right-handed alpha
Helix 29
AD2
A
518 530Right-handed alpha
Helix 30
AD3
A
531 534Right-handed 310
Helix 31
AD4
A
543 564Right-handed alpha
Helix 32
AD5
A
565 570Right-handed alpha
Helix 33
AD6
A
572 586Right-handed alpha
Helix 34
AD7
A
588 607Right-handed alpha
Helix 35
AD8
A
608 612Right-handed 310
Helix 36
AD9
A
613 627Right-handed alpha
Helix 37
AE1
A
659 678Right-handed alpha
Helix 38
AE2
A
679 685Right-handed 310
Helix 39
AE3
A
687 702Right-handed alpha
Helix 40
AE4
A
705 724Right-handed alpha
Helix 41
AE5
A
742 759Right-handed alpha
Helix 42
AE6
A
765 784Right-handed alpha
Helix 43
AE7
A
785 788Right-handed 310
Helix 44
AE8
A
794 810Right-handed alpha
Helix 45
AE9
A
832 854Right-handed alpha
Helix 46
AF1
A
857 872Right-handed alpha
Helix 47
AF2
A
876 895Right-handed alpha
Helix 48
AF3
A
896 898Right-handed 310
Helix 49
AF4
A
900 915Right-handed alpha
Helix 50
AF5
A
917 935Right-handed alpha
Helix 51
AF6
A
939 963Right-handed alpha
Helix 52
AF7
A
967 992Right-handed alpha
Helix 53
AF8
A
993 996Right-handed 310
Helix 54
AF9
A
997 1007Right-handed alpha
Helix 55
AG1
A
1014 1016Right-handed 310
Helix 56
AG2
A
1017 1031Right-handed alpha
Helix 57
AG3
A
1033 1038Right-handed alpha
Helix 58
AG4
A
1039 1064Right-handed alpha
Helix 59
AG5
A
1071 1076Right-handed alpha
Helix 60
AG6
A
1080 1097Right-handed alpha
Helix 61
AG7
A
1100 1105Right-handed alpha
Helix 62
AG8
A
1105 1113Right-handed alpha
Helix 63
AG9
B
42 51Right-handed alpha
Helix 64
AH1
B
53 72Right-handed alpha
Helix 65
AH2
B
76 94Right-handed alpha
Helix 66
AH3
B
96 117Right-handed alpha
Helix 67
AH4
B
122 131Right-handed alpha
Helix 68
AH5
B
135 152Right-handed alpha
Helix 69
AH6
B
153 159Right-handed 310
Helix 70
AH7
B
160 172Right-handed alpha
Helix 71
AH8
B
177 198Right-handed alpha
Helix 72
AH9
B
202 226Right-handed alpha
Helix 73
AI1
B
228 245Right-handed alpha
Helix 74
AI2
B
246 251Right-handed alpha
Helix 75
AI3
B
252 267Right-handed alpha
Helix 76
AI4
B
271 289Right-handed alpha
Helix 77
AI5
B
289 296Right-handed alpha
Helix 78
AI6
B
298 312Right-handed alpha
Helix 79
AI7
B
315 322Right-handed alpha
Helix 80
AI8
B
333 349Right-handed alpha
Helix 81
AI9
B
350 353Right-handed 310
Helix 82
AJ1
B
354 368Right-handed alpha
Helix 83
AJ2
B
370 388Right-handed alpha
Helix 84
AJ3
B
388 395Right-handed alpha
Helix 85
AJ4
B
395 408Right-handed alpha
Helix 86
AJ5
B
411 429Right-handed alpha
Helix 87
AJ6
B
429 435Right-handed alpha
Helix 88
AJ7
B
436 450Right-handed alpha
Helix 89
AJ8
B
453 470Right-handed alpha
Helix 90
AJ9
B
472 494Right-handed alpha
Helix 91
AK1
B
496 515Right-handed alpha
Helix 92
AK2
B
518 531Right-handed alpha
Helix 93
AK3
B
543 564Right-handed alpha
Helix 94
AK4
B
565 570Right-handed alpha
Helix 95
AK5
B
572 586Right-handed alpha
Helix 96
AK6
B
588 607Right-handed alpha
Helix 97
AK7
B
608 612Right-handed 310
Helix 98
AK8
B
613 627Right-handed alpha
Helix 99
AK9
B
659 681Right-handed alpha
Helix 100
AL1
B
682 686Right-handed 310
Helix 101
AL2
B
687 702Right-handed alpha
Helix 102
AL3
B
705 724Right-handed alpha
Helix 103
AL4
B
742 759Right-handed alpha
Helix 104
AL5
B
765 784Right-handed alpha
Helix 105
AL6
B
785 788Right-handed 310
Helix 106
AL7
B
794 810Right-handed alpha
Helix 107
AL8
B
832 854Right-handed alpha
Helix 108
AL9
B
857 872Right-handed alpha
Helix 109
AM1
B
876 895Right-handed alpha
Helix 110
AM2
B
896 898Right-handed 310
Helix 111
AM3
B
900 915Right-handed alpha
Helix 112
AM4
B
917 935Right-handed alpha
Helix 113
AM5
B
939 962Right-handed alpha
Helix 114
AM6
B
967 992Right-handed alpha
Helix 115
AM7
B
993 996Right-handed 310
Helix 116
AM8
B
997 1007Right-handed alpha
Helix 117
AM9
B
1014 1016Right-handed 310
Helix 118
AN1
B
1017 1031Right-handed alpha
Helix 119
AN2
B
1033 1039Right-handed alpha
Helix 120
AN3
B
1039 1064Right-handed alpha
Helix 121
AN4
B
1080 1098Right-handed alpha
Helix 122
AN5
B
1099 1103Right-handed 310
Helix 123
AN6
B
1105 1113Right-handed alpha
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There are no sheets in PDB entry 5VCH
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