Analysis of interatomic Contacts of Structural Units in PDB entry:
5VCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VCM entry

There are 2 chains in PDB entry 5VCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 86GLN 447
B
 ALA 78ARG 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5VCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
86 102Right-handed alpha
Helix 2
AA2
A
127 141Right-handed alpha
Helix 3
AA3
A
157 166Right-handed alpha
Helix 4
AA4
A
201 209Right-handed alpha
Helix 5
AA5
A
224 244Right-handed alpha
Helix 6
AA6
A
245 249Right-handed 310
Helix 7
AA7
A
267 283Right-handed alpha
Helix 8
AA8
A
313 318Right-handed alpha
Helix 9
AA9
A
324 333Right-handed alpha
Helix 10
AB1
A
334 341Right-handed alpha
Helix 11
AB2
A
345 357Right-handed alpha
Helix 12
AB3
A
387 402Right-handed alpha
Helix 13
AB4
A
403 406Right-handed 310
Helix 14
AB5
A
433 443Right-handed alpha
Helix 15
AB6
B
86 102Right-handed alpha
Helix 16
AB7
B
109 113Right-handed 310
Helix 17
AB8
B
127 141Right-handed alpha
Helix 18
AB9
B
157 166Right-handed alpha
Helix 19
AC1
B
201 209Right-handed alpha
Helix 20
AC2
B
224 227Right-handed 310
Helix 21
AC3
B
228 244Right-handed alpha
Helix 22
AC4
B
245 249Right-handed 310
Helix 23
AC5
B
267 283Right-handed alpha
Helix 24
AC6
B
300 304Right-handed 310
Helix 25
AC7
B
324 334Right-handed alpha
Helix 26
AC8
B
334 341Right-handed alpha
Helix 27
AC9
B
345 357Right-handed alpha
Helix 28
AD1
B
387 399Right-handed alpha
Helix 29
AD2
B
433 443Right-handed alpha
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There are 6 sheets in PDB entry 5VCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 176first strand
Strand 2
A
148 153parallel
Strand 3
A
118 124parallel
Strand 4
A
254 259parallel
Strand 5
A
321 323anti-parallel
Strand 6
A
288 290anti-parallel
Strand 7
A
363 367parallel
Strand 8
A
306 311anti-parallel
Strand 9
A
412 419parallel
Strand 10
B
418 422anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
372 374anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 176first strand
Strand 2
B
148 153parallel
Strand 3
B
118 124parallel
Strand 4
B
254 259parallel
Strand 5
B
321 323anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 264first strand
Strand 2
B
372 374anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 289first strand
Strand 2
B
364 367parallel
Strand 3
B
306 310anti-parallel
Strand 4
B
412 413parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
292 293first strand
Strand 2
B
318 319anti-parallel
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