Analysis of interatomic Contacts of Structural Units in PDB entry:
5VCW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VCW entry

There are 2 chains in PDB entry 5VCW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 77GLN 361
B
 LEU 77GLN 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5VCW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
104 109Right-handed alpha
Helix 2
AA2
A
147 165Right-handed alpha
Helix 3
AA3
A
193 202Right-handed alpha
Helix 4
AA4
A
206 226Right-handed alpha
Helix 5
AA5
A
235 237Right-handed 310
Helix 6
AA6
A
243 245Right-handed 310
Helix 7
AA7
A
270 274Right-handed 310
Helix 8
AA8
A
275 281Right-handed 310
Helix 9
AA9
A
285 302Right-handed alpha
Helix 10
AB1
A
308 315Right-handed alpha
Helix 11
AB2
A
329 340Right-handed alpha
Helix 12
AB3
A
349 355Right-handed alpha
Helix 13
AB4
A
356 360Right-handed 310
Helix 14
AB5
B
104 109Right-handed alpha
Helix 15
AB6
B
147 165Right-handed alpha
Helix 16
AB7
B
193 202Right-handed alpha
Helix 17
AB8
B
206 226Right-handed alpha
Helix 18
AB9
B
235 237Right-handed 310
Helix 19
AC1
B
243 245Right-handed 310
Helix 20
AC2
B
270 274Right-handed 310
Helix 21
AC3
B
275 281Right-handed 310
Helix 22
AC4
B
285 302Right-handed alpha
Helix 23
AC5
B
308 315Right-handed alpha
Helix 24
AC6
B
329 340Right-handed alpha
Helix 25
AC7
B
349 355Right-handed alpha
Helix 26
AC8
B
356 360Right-handed 310
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There are 6 sheets in PDB entry 5VCW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
173 179anti-parallel
Strand 3
A
182 188anti-parallel
Strand 4
A
135 141anti-parallel
Strand 5
A
122 129anti-parallel
Strand 6
A
110 118anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
256 257anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 241first strand
Strand 2
A
247 249anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 81first strand
Strand 2
B
173 179anti-parallel
Strand 3
B
182 188anti-parallel
Strand 4
B
135 141anti-parallel
Strand 5
B
122 129anti-parallel
Strand 6
B
110 119anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 230first strand
Strand 2
B
256 257anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 241first strand
Strand 2
B
247 249anti-parallel
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