Analysis of interatomic Contacts of Structural Units in PDB entry:
5VDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VDV entry

There are 2 chains in PDB entry 5VDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 161GLU 521
B
 GLY 161ASP 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5VDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
161 174Right-handed alpha
Helix 2
AA2
A
175 182Right-handed alpha
Helix 3
AA3
A
182 200Right-handed alpha
Helix 4
AA4
A
212 217Right-handed alpha
Helix 5
AA5
A
260 266Right-handed 310
Helix 6
AA6
A
272 289Right-handed alpha
Helix 7
AA7
A
340 345Right-handed alpha
Helix 8
AA8
A
345 355Right-handed alpha
Helix 9
AA9
A
379 388Right-handed alpha
Helix 10
AB1
A
399 403Right-handed 310
Helix 11
AB2
A
405 424Right-handed alpha
Helix 12
AB3
A
429 433Right-handed 310
Helix 13
AB4
A
434 449Right-handed alpha
Helix 14
AB5
A
451 458Right-handed 310
Helix 15
AB6
A
459 478Right-handed alpha
Helix 16
AB7
A
497 514Right-handed alpha
Helix 17
AB8
B
162 174Right-handed alpha
Helix 18
AB9
B
175 182Right-handed alpha
Helix 19
AC1
B
182 200Right-handed alpha
Helix 20
AC2
B
260 266Right-handed 310
Helix 21
AC3
B
272 289Right-handed alpha
Helix 22
AC4
B
340 345Right-handed alpha
Helix 23
AC5
B
345 355Right-handed alpha
Helix 24
AC6
B
379 388Right-handed alpha
Helix 25
AC7
B
399 403Right-handed 310
Helix 26
AC8
B
405 424Right-handed alpha
Helix 27
AC9
B
429 433Right-handed 310
Helix 28
AD1
B
434 449Right-handed alpha
Helix 29
AD2
B
451 458Right-handed 310
Helix 30
AD3
B
459 478Right-handed alpha
Helix 31
AD4
B
497 514Right-handed alpha
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There are 5 sheets in PDB entry 5VDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
225 233anti-parallel
Strand 3
A
316 326parallel
Strand 4
A
357 361anti-parallel
Strand 5
A
375 378anti-parallel
Strand 6
A
248 253anti-parallel
Strand 7
A
237 241anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
225 233anti-parallel
Strand 3
A
316 326parallel
Strand 4
A
308 312anti-parallel
Strand 5
A
296 298anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
369 371anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 208first strand
Strand 2
B
225 233anti-parallel
Strand 3
B
316 326parallel
Strand 4
B
357 361anti-parallel
Strand 5
B
375 378anti-parallel
Strand 6
B
248 253anti-parallel
Strand 7
B
237 241anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 208first strand
Strand 2
B
225 233anti-parallel
Strand 3
B
316 326parallel
Strand 4
B
308 312anti-parallel
Strand 5
B
296 298anti-parallel
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