Analysis of interatomic Contacts of Structural Units in PDB entry:
5VE2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VE2 entry

There are 6 chains in PDB entry 5VE2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	ALA 253
B	LYS 3	ALA 253
C	LYS 3	ALA 253
D	LYS 3	ALA 253
E	LYS 3	ALA 253
F	LYS 3	ILE 88

There are168 helices in PDB entry 5VE2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	24	Right-handed 310
Helix 2	AA2	A	28	45	Right-handed alpha
Helix 3	AA3	A	65	70	Right-handed alpha
Helix 4	AA4	A	79	91	Right-handed alpha
Helix 5	AA5	A	105	110	Right-handed alpha
Helix 6	AA6	A	111	114	Right-handed 310
Helix 7	AA7	A	129	133	Right-handed 310
Helix 8	AA8	A	139	149	Right-handed alpha
Helix 9	AA9	A	149	158	Right-handed alpha
Helix 10	AB1	A	165	171	Right-handed alpha
Helix 11	AB2	A	182	196	Right-handed alpha
Helix 12	AB3	A	198	212	Right-handed alpha
Helix 13	AB4	A	213	233	Right-handed alpha
Helix 14	AB5	A	234	246	Right-handed alpha
Helix 15	AB6	B	20	24	Right-handed 310
Helix 16	AB7	B	28	45	Right-handed alpha
Helix 17	AB8	B	65	70	Right-handed alpha
Helix 18	AB9	B	79	91	Right-handed alpha
Helix 19	AC1	B	105	110	Right-handed alpha
Helix 20	AC2	B	111	114	Right-handed 310
Helix 21	AC3	B	129	133	Right-handed 310
Helix 22	AC4	B	139	149	Right-handed alpha
Helix 23	AC5	B	149	158	Right-handed alpha
Helix 24	AC6	B	165	171	Right-handed alpha
Helix 25	AC7	B	182	196	Right-handed alpha
Helix 26	AC8	B	198	212	Right-handed alpha
Helix 27	AC9	B	213	233	Right-handed alpha
Helix 28	AD1	B	234	246	Right-handed alpha
Helix 29	AD2	C	20	24	Right-handed 310
Helix 30	AD3	C	28	45	Right-handed alpha
Helix 31	AD4	C	65	70	Right-handed alpha
Helix 32	AD5	C	79	91	Right-handed alpha
Helix 33	AD6	C	105	110	Right-handed alpha
Helix 34	AD7	C	111	114	Right-handed 310
Helix 35	AD8	C	129	133	Right-handed 310
Helix 36	AD9	C	139	149	Right-handed alpha
Helix 37	AE1	C	149	158	Right-handed alpha
Helix 38	AE2	C	165	171	Right-handed alpha
Helix 39	AE3	C	182	196	Right-handed alpha
Helix 40	AE4	C	198	212	Right-handed alpha
Helix 41	AE5	C	213	233	Right-handed alpha
Helix 42	AE6	C	234	246	Right-handed alpha
Helix 43	AE7	D	20	24	Right-handed 310
Helix 44	AE8	D	28	45	Right-handed alpha
Helix 45	AE9	D	65	70	Right-handed alpha
Helix 46	AF1	D	79	91	Right-handed alpha
Helix 47	AF2	D	105	110	Right-handed alpha
Helix 48	AF3	D	111	114	Right-handed 310
Helix 49	AF4	D	129	133	Right-handed 310
Helix 50	AF5	D	139	149	Right-handed alpha
Helix 51	AF6	D	149	158	Right-handed alpha
Helix 52	AF7	D	165	171	Right-handed alpha
Helix 53	AF8	D	182	196	Right-handed alpha
Helix 54	AF9	D	198	212	Right-handed alpha
Helix 55	AG1	D	213	233	Right-handed alpha
Helix 56	AG2	D	234	246	Right-handed alpha
Helix 57	AG3	E	20	24	Right-handed 310
Helix 58	AG4	E	28	45	Right-handed alpha
Helix 59	AG5	E	65	70	Right-handed alpha
Helix 60	AG6	E	79	91	Right-handed alpha
Helix 61	AG7	E	105	110	Right-handed alpha
Helix 62	AG8	E	111	114	Right-handed 310
Helix 63	AG9	E	129	133	Right-handed 310
Helix 64	AH1	E	139	149	Right-handed alpha
Helix 65	AH2	E	149	158	Right-handed alpha
Helix 66	AH3	E	165	171	Right-handed alpha
Helix 67	AH4	E	182	196	Right-handed alpha
Helix 68	AH5	E	198	212	Right-handed alpha
Helix 69	AH6	E	213	233	Right-handed alpha
Helix 70	AH7	E	234	246	Right-handed alpha
Helix 71	AH8	F	20	24	Right-handed 310
Helix 72	AH9	F	28	45	Right-handed alpha
Helix 73	AI1	F	65	70	Right-handed alpha
Helix 74	AI2	F	79	91	Right-handed alpha
Helix 75	AI3	F	105	110	Right-handed alpha
Helix 76	AI4	F	111	114	Right-handed 310
Helix 77	AI5	F	129	133	Right-handed 310
Helix 78	AI6	F	139	149	Right-handed alpha
Helix 79	AI7	F	149	158	Right-handed alpha
Helix 80	AI8	F	165	171	Right-handed alpha
Helix 81	AI9	F	182	196	Right-handed alpha
Helix 82	AJ1	F	198	212	Right-handed alpha
Helix 83	AJ2	F	213	233	Right-handed alpha
Helix 84	AJ3	F	234	246	Right-handed alpha
Helix 85	AJ4	G	20	24	Right-handed 310
Helix 86	AJ5	G	28	45	Right-handed alpha
Helix 87	AJ6	G	65	70	Right-handed alpha
Helix 88	AJ7	G	79	91	Right-handed alpha
Helix 89	AJ8	G	105	110	Right-handed alpha
Helix 90	AJ9	G	111	114	Right-handed 310
Helix 91	AK1	G	129	133	Right-handed 310
Helix 92	AK2	G	139	149	Right-handed alpha
Helix 93	AK3	G	149	158	Right-handed alpha
Helix 94	AK4	G	165	171	Right-handed alpha
Helix 95	AK5	G	182	196	Right-handed alpha
Helix 96	AK6	G	198	212	Right-handed alpha
Helix 97	AK7	G	213	233	Right-handed alpha
Helix 98	AK8	G	234	246	Right-handed alpha
Helix 99	AK9	H	20	24	Right-handed 310
Helix 100	AL1	H	28	45	Right-handed alpha
Helix 101	AL2	H	65	70	Right-handed alpha
Helix 102	AL3	H	79	91	Right-handed alpha
Helix 103	AL4	H	105	110	Right-handed alpha
Helix 104	AL5	H	111	114	Right-handed 310
Helix 105	AL6	H	129	133	Right-handed 310
Helix 106	AL7	H	139	149	Right-handed alpha
Helix 107	AL8	H	149	158	Right-handed alpha
Helix 108	AL9	H	165	171	Right-handed alpha
Helix 109	AM1	H	182	196	Right-handed alpha
Helix 110	AM2	H	198	212	Right-handed alpha
Helix 111	AM3	H	213	233	Right-handed alpha
Helix 112	AM4	H	234	246	Right-handed alpha
Helix 113	AM5	I	20	24	Right-handed 310
Helix 114	AM6	I	28	45	Right-handed alpha
Helix 115	AM7	I	65	70	Right-handed alpha
Helix 116	AM8	I	79	91	Right-handed alpha
Helix 117	AM9	I	105	110	Right-handed alpha
Helix 118	AN1	I	111	114	Right-handed 310
Helix 119	AN2	I	129	133	Right-handed 310
Helix 120	AN3	I	139	149	Right-handed alpha
Helix 121	AN4	I	149	158	Right-handed alpha
Helix 122	AN5	I	165	171	Right-handed alpha
Helix 123	AN6	I	182	196	Right-handed alpha
Helix 124	AN7	I	198	212	Right-handed alpha
Helix 125	AN8	I	213	233	Right-handed alpha
Helix 126	AN9	I	234	246	Right-handed alpha
Helix 127	AO1	J	20	24	Right-handed 310
Helix 128	AO2	J	28	45	Right-handed alpha
Helix 129	AO3	J	65	70	Right-handed alpha
Helix 130	AO4	J	79	91	Right-handed alpha
Helix 131	AO5	J	105	110	Right-handed alpha
Helix 132	AO6	J	111	114	Right-handed 310
Helix 133	AO7	J	129	133	Right-handed 310
Helix 134	AO8	J	139	149	Right-handed alpha
Helix 135	AO9	J	149	158	Right-handed alpha
Helix 136	AP1	J	165	171	Right-handed alpha
Helix 137	AP2	J	182	196	Right-handed alpha
Helix 138	AP3	J	198	212	Right-handed alpha
Helix 139	AP4	J	213	233	Right-handed alpha
Helix 140	AP5	J	234	246	Right-handed alpha
Helix 141	AP6	K	20	24	Right-handed 310
Helix 142	AP7	K	28	45	Right-handed alpha
Helix 143	AP8	K	65	70	Right-handed alpha
Helix 144	AP9	K	79	91	Right-handed alpha
Helix 145	AQ1	K	105	110	Right-handed alpha
Helix 146	AQ2	K	111	114	Right-handed 310
Helix 147	AQ3	K	129	133	Right-handed 310
Helix 148	AQ4	K	139	149	Right-handed alpha
Helix 149	AQ5	K	149	158	Right-handed alpha
Helix 150	AQ6	K	165	171	Right-handed alpha
Helix 151	AQ7	K	182	196	Right-handed alpha
Helix 152	AQ8	K	198	212	Right-handed alpha
Helix 153	AQ9	K	213	233	Right-handed alpha
Helix 154	AR1	K	234	246	Right-handed alpha
Helix 155	AR2	L	20	24	Right-handed 310
Helix 156	AR3	L	28	45	Right-handed alpha
Helix 157	AR4	L	65	70	Right-handed alpha
Helix 158	AR5	L	79	91	Right-handed alpha
Helix 159	AR6	L	105	110	Right-handed alpha
Helix 160	AR7	L	111	114	Right-handed 310
Helix 161	AR8	L	129	133	Right-handed 310
Helix 162	AR9	L	139	149	Right-handed alpha
Helix 163	AS1	L	149	158	Right-handed alpha
Helix 164	AS2	L	165	171	Right-handed alpha
Helix 165	AS3	L	182	196	Right-handed alpha
Helix 166	AS4	L	198	212	Right-handed alpha
Helix 167	AS5	L	213	233	Right-handed alpha
Helix 168	AS6	L	234	246	Right-handed alpha

There are 24 sheets in PDB entry 5VE2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	10	first strand
Strand 2	A	13	18	anti-parallel
Strand 3	A	50	55	parallel
Strand 4	A	95	99	parallel
Strand 5	A	116	120	parallel
Strand 6	A	176	178	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	104	first strand
Strand 2	A	124	126	parallel
Strand 3	A	163	164	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	10	first strand
Strand 2	B	13	18	anti-parallel
Strand 3	B	50	55	parallel
Strand 4	B	95	99	parallel
Strand 5	B	116	120	parallel
Strand 6	B	176	178	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	104	first strand
Strand 2	B	124	126	parallel
Strand 3	B	163	164	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	10	first strand
Strand 2	C	13	18	anti-parallel
Strand 3	C	50	55	parallel
Strand 4	C	95	99	parallel
Strand 5	C	116	120	parallel
Strand 6	C	176	178	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	104	first strand
Strand 2	C	124	126	parallel
Strand 3	C	163	164	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	10	first strand
Strand 2	D	13	18	anti-parallel
Strand 3	D	50	55	parallel
Strand 4	D	95	99	parallel
Strand 5	D	116	120	parallel
Strand 6	D	176	178	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	104	first strand
Strand 2	D	124	126	parallel
Strand 3	D	163	164	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	10	first strand
Strand 2	E	13	18	anti-parallel
Strand 3	E	50	55	parallel
Strand 4	E	95	99	parallel
Strand 5	E	116	120	parallel
Strand 6	E	176	178	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	104	first strand
Strand 2	E	124	126	parallel
Strand 3	E	163	164	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	10	first strand
Strand 2	F	13	18	anti-parallel
Strand 3	F	50	55	parallel
Strand 4	F	95	99	parallel
Strand 5	F	116	120	parallel
Strand 6	F	176	178	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	104	first strand
Strand 2	F	124	126	parallel
Strand 3	F	163	164	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	10	first strand
Strand 2	G	13	18	anti-parallel
Strand 3	G	50	55	parallel
Strand 4	G	95	99	parallel
Strand 5	G	116	120	parallel
Strand 6	G	176	178	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	102	104	first strand
Strand 2	G	124	126	parallel
Strand 3	G	163	164	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	10	first strand
Strand 2	H	13	18	anti-parallel
Strand 3	H	50	55	parallel
Strand 4	H	95	99	parallel
Strand 5	H	116	120	parallel
Strand 6	H	176	178	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	102	104	first strand
Strand 2	H	124	126	parallel
Strand 3	H	163	164	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	10	first strand
Strand 2	I	13	18	anti-parallel
Strand 3	I	50	55	parallel
Strand 4	I	95	99	parallel
Strand 5	I	116	120	parallel
Strand 6	I	176	178	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	102	104	first strand
Strand 2	I	124	126	parallel
Strand 3	I	163	164	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	10	first strand
Strand 2	J	13	18	anti-parallel
Strand 3	J	50	55	parallel
Strand 4	J	95	99	parallel
Strand 5	J	116	120	parallel
Strand 6	J	176	178	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	102	104	first strand
Strand 2	J	124	126	parallel
Strand 3	J	163	164	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	10	first strand
Strand 2	K	13	18	anti-parallel
Strand 3	K	50	55	parallel
Strand 4	K	95	99	parallel
Strand 5	K	116	120	parallel
Strand 6	K	176	178	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	102	104	first strand
Strand 2	K	124	126	parallel
Strand 3	K	163	164	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	10	first strand
Strand 2	L	13	18	anti-parallel
Strand 3	L	50	55	parallel
Strand 4	L	95	99	parallel
Strand 5	L	116	120	parallel
Strand 6	L	176	178	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	102	104	first strand
Strand 2	L	124	126	parallel
Strand 3	L	163	164	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VE2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VE2