Analysis of interatomic Contacts of Structural Units in PDB entry:
5VE3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VE3 entry

There are 4 chains in PDB entry 5VE3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY -2VAL 313
B
 ARG 315GLU 353
A
 GLY -2VAL 313
A
 ARG 315GLU 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5VE3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
33 35Right-handed 310
Helix 2
AA2
B
36 47Right-handed alpha
Helix 3
AA3
B
66 75Right-handed alpha
Helix 4
AA4
B
83 85Right-handed 310
Helix 5
AA5
B
149 161Right-handed alpha
Helix 6
AA6
B
184 191Right-handed alpha
Helix 7
AA7
B
199 209Right-handed alpha
Helix 8
AA8
B
217 226Right-handed alpha
Helix 9
AA9
B
257 264Right-handed alpha
Helix 10
AB1
B
265 268Right-handed 310
Helix 11
AB2
B
275 280Right-handed alpha
Helix 12
AB3
B
293 298Right-handed alpha
Helix 13
AB4
B
299 304Right-handed 310
Helix 14
AB5
B
317 330Right-handed alpha
Helix 15
AB6
B
340 348Right-handed alpha
Helix 16
AB7
A
33 35Right-handed 310
Helix 17
AB8
A
36 47Right-handed alpha
Helix 18
AB9
A
66 75Right-handed alpha
Helix 19
AC1
A
83 85Right-handed 310
Helix 20
AC2
A
149 161Right-handed alpha
Helix 21
AC3
A
184 191Right-handed alpha
Helix 22
AC4
A
199 209Right-handed alpha
Helix 23
AC5
A
217 226Right-handed alpha
Helix 24
AC6
A
257 264Right-handed alpha
Helix 25
AC7
A
265 268Right-handed 310
Helix 26
AC8
A
275 280Right-handed alpha
Helix 27
AC9
A
293 298Right-handed alpha
Helix 28
AD1
A
299 304Right-handed 310
Helix 29
AD2
A
318 330Right-handed alpha
Helix 30
AD3
A
340 348Right-handed alpha
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There are 10 sheets in PDB entry 5VE3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 9first strand
Strand 2
B
14 21anti-parallel
Strand 3
B
26 30anti-parallel
Strand 4
B
50 55parallel
Strand 5
B
77 81parallel
Strand 6
B
91 93parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 101first strand
Strand 2
B
104 110anti-parallel
Strand 3
B
119 123anti-parallel
Strand 4
B
128 132anti-parallel
Strand 5
B
169 172parallel
Strand 6
B
182 183anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 136first strand
Strand 2
B
139 140anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 248first strand
Strand 2
B
254 256anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 291first strand
Strand 2
B
269 272parallel
Strand 3
B
310 313parallel
Strand 4
B
335 337parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 9first strand
Strand 2
A
14 21anti-parallel
Strand 3
A
26 30anti-parallel
Strand 4
A
50 55parallel
Strand 5
A
77 81parallel
Strand 6
A
91 93parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 101first strand
Strand 2
A
104 110anti-parallel
Strand 3
A
119 123anti-parallel
Strand 4
A
128 132anti-parallel
Strand 5
A
169 172parallel
Strand 6
A
182 183anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
139 140anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 248first strand
Strand 2
A
254 256anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
269 272parallel
Strand 3
A
310 313parallel
Strand 4
A
335 337parallel
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