Analysis of interatomic Contacts of Structural Units in PDB entry:
5VE5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VE5 entry

There are 3 chains in PDB entry 5VE5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1SER 356
B
 SER -1GLY 355
C
 HIS 0SER 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 5VE5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 35Right-handed 310
Helix 2
AA2
A
36 47Right-handed alpha
Helix 3
AA3
A
66 75Right-handed alpha
Helix 4
AA4
A
149 161Right-handed alpha
Helix 5
AA5
A
184 191Right-handed alpha
Helix 6
AA6
A
199 209Right-handed alpha
Helix 7
AA7
A
217 227Right-handed alpha
Helix 8
AA8
A
257 264Right-handed alpha
Helix 9
AA9
A
265 268Right-handed 310
Helix 10
AB1
A
275 280Right-handed alpha
Helix 11
AB2
A
293 298Right-handed alpha
Helix 12
AB3
A
299 304Right-handed 310
Helix 13
AB4
A
317 330Right-handed alpha
Helix 14
AB5
A
340 348Right-handed alpha
Helix 15
AB6
B
33 35Right-handed 310
Helix 16
AB7
B
36 47Right-handed alpha
Helix 17
AB8
B
66 75Right-handed alpha
Helix 18
AB9
B
83 85Right-handed 310
Helix 19
AC1
B
149 161Right-handed alpha
Helix 20
AC2
B
184 191Right-handed alpha
Helix 21
AC3
B
199 208Right-handed alpha
Helix 22
AC4
B
217 226Right-handed alpha
Helix 23
AC5
B
257 263Right-handed alpha
Helix 24
AC6
B
264 268Right-handed 310
Helix 25
AC7
B
275 280Right-handed alpha
Helix 26
AC8
B
297 304Right-handed 310
Helix 27
AC9
B
317 330Right-handed alpha
Helix 28
AD1
B
340 348Right-handed alpha
Helix 29
AD2
C
33 35Right-handed 310
Helix 30
AD3
C
36 47Right-handed alpha
Helix 31
AD4
C
66 75Right-handed alpha
Helix 32
AD5
C
83 85Right-handed 310
Helix 33
AD6
C
149 161Right-handed alpha
Helix 34
AD7
C
184 191Right-handed alpha
Helix 35
AD8
C
199 209Right-handed alpha
Helix 36
AD9
C
217 226Right-handed alpha
Helix 37
AE1
C
257 264Right-handed alpha
Helix 38
AE2
C
265 268Right-handed 310
Helix 39
AE3
C
275 280Right-handed alpha
Helix 40
AE4
C
293 301Right-handed alpha
Helix 41
AE5
C
302 304Right-handed 310
Helix 42
AE6
C
317 330Right-handed alpha
Helix 43
AE7
C
340 348Right-handed alpha
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There are 15 sheets in PDB entry 5VE5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 9first strand
Strand 2
A
14 21anti-parallel
Strand 3
A
26 30anti-parallel
Strand 4
A
50 55parallel
Strand 5
A
77 81parallel
Strand 6
A
91 93parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 101first strand
Strand 2
A
104 110anti-parallel
Strand 3
A
119 123anti-parallel
Strand 4
A
128 130anti-parallel
Strand 5
A
169 171parallel
Strand 6
A
182 183anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
139 140anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 248first strand
Strand 2
A
254 256anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
269 272parallel
Strand 3
A
310 313parallel
Strand 4
A
335 337parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 9first strand
Strand 2
B
14 21anti-parallel
Strand 3
B
26 30anti-parallel
Strand 4
B
50 55parallel
Strand 5
B
77 81parallel
Strand 6
B
91 93parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 101first strand
Strand 2
B
104 110anti-parallel
Strand 3
B
119 123anti-parallel
Strand 4
B
128 130anti-parallel
Strand 5
B
169 171parallel
Strand 6
B
182 183anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 136first strand
Strand 2
B
139 140anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 248first strand
Strand 2
B
254 256anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 291first strand
Strand 2
B
269 272parallel
Strand 3
B
310 313parallel
Strand 4
B
335 337parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 9first strand
Strand 2
C
14 21anti-parallel
Strand 3
C
26 30anti-parallel
Strand 4
C
50 55parallel
Strand 5
C
77 81parallel
Strand 6
C
91 93parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
98 101first strand
Strand 2
C
104 110anti-parallel
Strand 3
C
119 123anti-parallel
Strand 4
C
128 130anti-parallel
Strand 5
C
169 171parallel
Strand 6
C
182 183anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 136first strand
Strand 2
C
139 140anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
246 248first strand
Strand 2
C
254 256anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
290 291first strand
Strand 2
C
269 272parallel
Strand 3
C
310 313parallel
Strand 4
C
335 337parallel
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