Analysis of interatomic Contacts of Structural Units in PDB entry:
5VE6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VE6 entry

There is 1 chain in PDB entry 5VE6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 944LEU 1405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5VE6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
947 975Right-handed alpha
Helix 2
AA2
A
987 990Right-handed 310
Helix 3
AA3
A
1061 1064Right-handed 310
Helix 4
AA4
A
1100 1106Right-handed alpha
Helix 5
AA5
A
1107 1114Right-handed alpha
Helix 6
AA6
A
1114 1139Right-handed alpha
Helix 7
AA7
A
1147 1149Right-handed 310
Helix 8
AA8
A
1245 1251Right-handed alpha
Helix 9
AA9
A
1251 1265Right-handed alpha
Helix 10
AB1
A
1269 1273Right-handed 310
Helix 11
AB2
A
1274 1280Right-handed alpha
Helix 12
AB3
A
1283 1287Right-handed 310
Helix 13
AB4
A
1295 1308Right-handed alpha
Helix 14
AB5
A
1317 1330Right-handed alpha
Helix 15
AB6
A
1347 1370Right-handed alpha
Helix 16
AB7
A
1378 1390Right-handed alpha
Helix 17
AB8
A
1392 1403Right-handed alpha
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There are 3 sheets in PDB entry 5VE6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
992 994first strand
Strand 2
A
1006 1013anti-parallel
Strand 3
A
1001 1002anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
992 994first strand
Strand 2
A
1006 1013anti-parallel
Strand 3
A
1020 1026anti-parallel
Strand 4
A
1084 1092anti-parallel
Strand 5
A
1050 1059anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1096 1099first strand
Strand 2
A
1151 1154anti-parallel
Strand 3
A
1211 1214anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il