Analysis of interatomic Contacts of Structural Units in PDB entry:
5VE9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VE9 entry

There are 3 chains in PDB entry 5VE9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7021PRO 7108
C
 ASP 7118ARG 7191
B
 GLY 7018PRO 7108
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5VE9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7027 7042Right-handed alpha
Helix 2
AA2
A
7045 7054Right-handed alpha
Helix 3
AA3
A
7063 7073Right-handed alpha
Helix 4
AA4
A
7078 7090Right-handed alpha
Helix 5
AA5
A
7099 7107Right-handed alpha
Helix 6
AA6
C
7120 7131Right-handed alpha
Helix 7
AA7
C
7178 7186Right-handed alpha
Helix 8
AA8
C
7187 7190Right-handed 310
Helix 9
AA9
B
7027 7041Right-handed alpha
Helix 10
AB1
B
7045 7054Right-handed alpha
Helix 11
AB2
B
7063 7073Right-handed alpha
Helix 12
AB3
B
7078 7090Right-handed alpha
Helix 13
AB4
B
7099 7107Right-handed alpha
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There are 4 sheets in PDB entry 5VE9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7023 7026first strand
Strand 2
B
7022 7025anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7060 7062first strand
Strand 2
A
7096 7098anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7141 7145first strand
Strand 2
C
7148 7151anti-parallel
Strand 3
C
7157 7163anti-parallel
Strand 4
C
7166 7171anti-parallel
Strand 5
C
7174 7177anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7060 7062first strand
Strand 2
B
7096 7098anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il