Analysis of interatomic Contacts of Structural Units in PDB entry:
5VEG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VEG entry

There are 3 chains in PDB entry 5VEG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 148
B
 MET 1LYS 149
C
 MET 1SER 148
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5VEG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 28Right-handed alpha
Helix 2
AA2
A
39 41Right-handed 310
Helix 3
AA3
A
42 47Right-handed alpha
Helix 4
AA4
A
65 67Right-handed 310
Helix 5
AA5
A
68 77Right-handed alpha
Helix 6
AA6
A
92 99Right-handed 310
Helix 7
AA7
A
100 113Right-handed alpha
Helix 8
AA8
A
129 148Right-handed alpha
Helix 9
AA9
B
13 29Right-handed alpha
Helix 10
AB1
B
39 41Right-handed 310
Helix 11
AB2
B
42 47Right-handed alpha
Helix 12
AB3
B
65 67Right-handed 310
Helix 13
AB4
B
68 78Right-handed alpha
Helix 14
AB5
B
92 99Right-handed 310
Helix 15
AB6
B
100 113Right-handed alpha
Helix 16
AB7
B
130 148Right-handed alpha
Helix 17
AB8
C
13 29Right-handed alpha
Helix 18
AB9
C
39 41Right-handed 310
Helix 19
AC1
C
42 47Right-handed alpha
Helix 20
AC2
C
65 67Right-handed 310
Helix 21
AC3
C
68 77Right-handed alpha
Helix 22
AC4
C
92 99Right-handed 310
Helix 23
AC5
C
100 113Right-handed alpha
Helix 24
AC6
C
130 148Right-handed alpha
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There are 6 sheets in PDB entry 5VEG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
2 9parallel
Strand 3
A
51 56parallel
Strand 4
A
84 91parallel
Strand 5
A
116 117parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
2 9parallel
Strand 3
A
51 56parallel
Strand 4
A
84 91parallel
Strand 5
A
122 125parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 37first strand
Strand 2
B
2 9parallel
Strand 3
B
51 56parallel
Strand 4
B
84 91parallel
Strand 5
B
116 117parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 37first strand
Strand 2
B
2 9parallel
Strand 3
B
51 56parallel
Strand 4
B
84 91parallel
Strand 5
B
122 125parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 37first strand
Strand 2
C
2 9parallel
Strand 3
C
51 56parallel
Strand 4
C
84 91parallel
Strand 5
C
116 117parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 37first strand
Strand 2
C
2 9parallel
Strand 3
C
51 56parallel
Strand 4
C
84 91parallel
Strand 5
C
122 125parallel
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