Analysis of interatomic Contacts of Structural Units in PDB entry:
5VEH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VEH entry

There are 4 chains in PDB entry 5VEH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 12GLY 254
A
 THR 256GLY 427
B
 LYS 12GLY 254
B
 THR 256LYS 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 5VEH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 20Right-handed 310
Helix 2
AA2
A
26 38Right-handed alpha
Helix 3
AA3
A
52 64Right-handed alpha
Helix 4
AA4
A
67 72Right-handed 310
Helix 5
AA5
A
79 95Right-handed alpha
Helix 6
AA6
A
108 122Right-handed alpha
Helix 7
AA7
A
137 145Right-handed alpha
Helix 8
AA8
A
164 166Right-handed 310
Helix 9
AA9
A
171 179Right-handed alpha
Helix 10
AB1
A
200 215Right-handed alpha
Helix 11
AB2
A
236 240Right-handed 310
Helix 12
AB3
A
243 245Right-handed 310
Helix 13
AB4
A
253 258Right-handed alpha
Helix 14
AB5
A
259 263Right-handed 310
Helix 15
AB6
A
270 283Right-handed alpha
Helix 16
AB7
A
289 305Right-handed alpha
Helix 17
AB8
A
312 336Right-handed alpha
Helix 18
AB9
A
353 359Right-handed 310
Helix 19
AC1
A
368 381Right-handed alpha
Helix 20
AC2
A
387 392Right-handed 310
Helix 21
AC3
A
393 401Right-handed 310
Helix 22
AC4
A
411 427Right-handed alpha
Helix 23
AC5
B
16 20Right-handed 310
Helix 24
AC6
B
25 38Right-handed alpha
Helix 25
AC7
B
52 64Right-handed alpha
Helix 26
AC8
B
79 95Right-handed alpha
Helix 27
AC9
B
108 122Right-handed alpha
Helix 28
AD1
B
137 145Right-handed alpha
Helix 29
AD2
B
164 166Right-handed 310
Helix 30
AD3
B
171 179Right-handed alpha
Helix 31
AD4
B
200 215Right-handed alpha
Helix 32
AD5
B
236 240Right-handed 310
Helix 33
AD6
B
243 245Right-handed 310
Helix 34
AD7
B
253 257Right-handed alpha
Helix 35
AD8
B
259 263Right-handed 310
Helix 36
AD9
B
270 283Right-handed alpha
Helix 37
AE1
B
289 305Right-handed alpha
Helix 38
AE2
B
312 336Right-handed alpha
Helix 39
AE3
B
368 382Right-handed alpha
Helix 40
AE4
B
387 392Right-handed 310
Helix 41
AE5
B
393 400Right-handed 310
Helix 42
AE6
B
411 426Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5VEH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
383 384parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
265 268anti-parallel
Strand 3
A
247 252anti-parallel
Strand 4
A
217 221parallel
Strand 5
A
183 189parallel
Strand 6
A
127 132parallel
Strand 7
A
148 153parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
168 169anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 340first strand
Strand 2
A
347 351anti-parallel
Strand 3
A
403 407anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 41first strand
Strand 2
B
383 384parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 107first strand
Strand 2
B
265 268anti-parallel
Strand 3
B
247 252anti-parallel
Strand 4
B
217 221parallel
Strand 5
B
183 189parallel
Strand 6
B
127 132parallel
Strand 7
B
148 153parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 156first strand
Strand 2
B
168 169anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 339first strand
Strand 2
B
347 351anti-parallel
Strand 3
B
403 407anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il