Analysis of interatomic Contacts of Structural Units in PDB entry:
5VEM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VEM entry

There are 3 chains in PDB entry 5VEM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 19SER 401
B
 HIS 19SER 401
C
 GLN 28SER 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5VEM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 46Right-handed alpha
Helix 2
AA2
A
48 57Right-handed alpha
Helix 3
AA3
A
71 80Right-handed alpha
Helix 4
AA4
A
84 89Right-handed alpha
Helix 5
AA5
A
113 118Right-handed alpha
Helix 6
AA6
A
122 130Right-handed alpha
Helix 7
AA7
A
162 176Right-handed alpha
Helix 8
AA8
A
190 198Right-handed alpha
Helix 9
AA9
A
203 225Right-handed alpha
Helix 10
AB1
A
252 256Right-handed alpha
Helix 11
AB2
A
257 259Right-handed 310
Helix 12
AB3
A
278 288Right-handed alpha
Helix 13
AB4
A
299 301Right-handed 310
Helix 14
AB5
A
302 306Right-handed 310
Helix 15
AB6
A
345 349Right-handed 310
Helix 16
AB7
A
372 382Right-handed alpha
Helix 17
AB8
A
391 399Right-handed 310
Helix 18
AB9
B
41 46Right-handed alpha
Helix 19
AC1
B
48 57Right-handed alpha
Helix 20
AC2
B
71 80Right-handed alpha
Helix 21
AC3
B
84 89Right-handed alpha
Helix 22
AC4
B
113 118Right-handed alpha
Helix 23
AC5
B
122 130Right-handed alpha
Helix 24
AC6
B
162 176Right-handed alpha
Helix 25
AC7
B
190 198Right-handed alpha
Helix 26
AC8
B
203 225Right-handed alpha
Helix 27
AC9
B
252 256Right-handed alpha
Helix 28
AD1
B
257 259Right-handed 310
Helix 29
AD2
B
278 288Right-handed alpha
Helix 30
AD3
B
299 301Right-handed 310
Helix 31
AD4
B
302 306Right-handed 310
Helix 32
AD5
B
345 349Right-handed 310
Helix 33
AD6
B
372 382Right-handed alpha
Helix 34
AD7
B
391 396Right-handed alpha
Helix 35
AD8
B
397 399Right-handed 310
Helix 36
AD9
C
41 46Right-handed alpha
Helix 37
AE1
C
48 57Right-handed alpha
Helix 38
AE2
C
71 80Right-handed alpha
Helix 39
AE3
C
84 89Right-handed alpha
Helix 40
AE4
C
113 118Right-handed alpha
Helix 41
AE5
C
122 130Right-handed alpha
Helix 42
AE6
C
162 176Right-handed alpha
Helix 43
AE7
C
190 198Right-handed alpha
Helix 44
AE8
C
203 225Right-handed alpha
Helix 45
AE9
C
252 256Right-handed alpha
Helix 46
AF1
C
257 259Right-handed 310
Helix 47
AF2
C
278 288Right-handed alpha
Helix 48
AF3
C
299 301Right-handed 310
Helix 49
AF4
C
302 306Right-handed 310
Helix 50
AF5
C
345 349Right-handed 310
Helix 51
AF6
C
372 382Right-handed alpha
Helix 52
AF7
C
391 399Right-handed 310
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There are 15 sheets in PDB entry 5VEM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
182 187parallel
Strand 3
A
30 35parallel
Strand 4
A
232 236parallel
Strand 5
A
352 355anti-parallel
Strand 6
A
59 65anti-parallel
Strand 7
A
363 369parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
102 104anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
337 338anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 251first strand
Strand 2
A
325 327parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 265first strand
Strand 2
A
269 274anti-parallel
Strand 3
A
316 320anti-parallel
Strand 4
A
293 297anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
182 187parallel
Strand 3
B
30 35parallel
Strand 4
B
232 236parallel
Strand 5
B
352 355anti-parallel
Strand 6
B
59 65anti-parallel
Strand 7
B
363 369parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
102 105anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 243first strand
Strand 2
B
337 338anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 251first strand
Strand 2
B
325 327parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 265first strand
Strand 2
B
269 274anti-parallel
Strand 3
B
316 320anti-parallel
Strand 4
B
293 297anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 137first strand
Strand 2
C
182 187parallel
Strand 3
C
30 35parallel
Strand 4
C
232 236parallel
Strand 5
C
352 355anti-parallel
Strand 6
C
59 65anti-parallel
Strand 7
C
363 369parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 97first strand
Strand 2
C
102 105anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
242 243first strand
Strand 2
C
337 338anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
249 251first strand
Strand 2
C
325 327parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
261 265first strand
Strand 2
C
269 274anti-parallel
Strand 3
C
316 320anti-parallel
Strand 4
C
293 297anti-parallel
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