Analysis of interatomic Contacts of Structural Units in PDB entry:
5VEO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VEO entry

There is 1 chain in PDB entry 5VEO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 27SER 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5VEO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 45Right-handed 310
Helix 2
AA2
A
48 57Right-handed alpha
Helix 3
AA3
A
71 82Right-handed alpha
Helix 4
AA4
A
84 89Right-handed alpha
Helix 5
AA5
A
107 109Right-handed 310
Helix 6
AA6
A
113 117Right-handed 310
Helix 7
AA7
A
122 130Right-handed alpha
Helix 8
AA8
A
162 175Right-handed alpha
Helix 9
AA9
A
190 198Right-handed alpha
Helix 10
AB1
A
203 225Right-handed alpha
Helix 11
AB2
A
253 255Right-handed 310
Helix 12
AB3
A
257 259Right-handed 310
Helix 13
AB4
A
278 287Right-handed alpha
Helix 14
AB5
A
299 301Right-handed 310
Helix 15
AB6
A
302 306Right-handed 310
Helix 16
AB7
A
345 349Right-handed 310
Helix 17
AB8
A
372 381Right-handed alpha
Helix 18
AB9
A
391 396Right-handed alpha
Helix 19
AC1
A
397 399Right-handed 310
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There are 5 sheets in PDB entry 5VEO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
134 137parallel
Strand 3
A
182 187parallel
Strand 4
A
30 35parallel
Strand 5
A
232 236parallel
Strand 6
A
352 355anti-parallel
Strand 7
A
59 65anti-parallel
Strand 8
A
363 369parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
102 105anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
337 338anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 251first strand
Strand 2
A
325 327parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 265first strand
Strand 2
A
269 274anti-parallel
Strand 3
A
316 320anti-parallel
Strand 4
A
293 297anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il