Analysis of interatomic Contacts of Structural Units in PDB entry:
5VEV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VEV entry

There are 2 chains in PDB entry 5VEV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -1	ARG 423
B	HIS -2	ILE 421

There are 36 helices in PDB entry 5VEV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	21	Right-handed alpha
Helix 2	AA2	A	34	40	Right-handed alpha
Helix 3	AA3	A	50	62	Right-handed alpha
Helix 4	AA4	A	70	76	Right-handed alpha
Helix 5	AA5	A	77	85	Right-handed alpha
Helix 6	AA6	A	93	102	Right-handed alpha
Helix 7	AA7	A	102	113	Right-handed alpha
Helix 8	AA8	A	125	137	Right-handed alpha
Helix 9	AA9	A	158	169	Right-handed alpha
Helix 10	AB1	A	238	249	Right-handed alpha
Helix 11	AB2	A	249	260	Right-handed alpha
Helix 12	AB3	A	287	290	Right-handed 310
Helix 13	AB4	A	293	301	Right-handed alpha
Helix 14	AB5	A	304	314	Right-handed alpha
Helix 15	AB6	A	316	320	Right-handed 310
Helix 16	AB7	A	355	359	Right-handed 310
Helix 17	AB8	A	390	403	Right-handed alpha
Helix 18	AB9	A	417	422	Right-handed alpha
Helix 19	AC1	B	9	21	Right-handed alpha
Helix 20	AC2	B	34	40	Right-handed alpha
Helix 21	AC3	B	50	62	Right-handed alpha
Helix 22	AC4	B	70	76	Right-handed alpha
Helix 23	AC5	B	77	85	Right-handed alpha
Helix 24	AC6	B	97	102	Right-handed alpha
Helix 25	AC7	B	102	113	Right-handed alpha
Helix 26	AC8	B	125	137	Right-handed alpha
Helix 27	AC9	B	158	170	Right-handed alpha
Helix 28	AD1	B	238	249	Right-handed alpha
Helix 29	AD2	B	249	260	Right-handed alpha
Helix 30	AD3	B	287	290	Right-handed 310
Helix 31	AD4	B	293	299	Right-handed alpha
Helix 32	AD5	B	304	314	Right-handed alpha
Helix 33	AD6	B	316	320	Right-handed 310
Helix 34	AD7	B	351	355	Right-handed 310
Helix 35	AD8	B	390	403	Right-handed alpha
Helix 36	AD9	B	417	421	Right-handed 310

There are 12 sheets in PDB entry 5VEV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	25	32	parallel
Strand 3	A	1	7	parallel
Strand 4	A	66	68	parallel
Strand 5	A	89	90	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	123	first strand
Strand 2	A	182	186	anti-parallel
Strand 3	A	140	143	anti-parallel
Strand 4	A	154	156	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	206	first strand
Strand 2	A	191	200	anti-parallel
Strand 3	A	265	274	anti-parallel
Strand 4	A	280	285	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	212	first strand
Strand 2	A	229	232	anti-parallel
Strand 3	A	328	335	anti-parallel
Strand 4	A	380	388	anti-parallel
Strand 5	A	360	363	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	217	first strand
Strand 2	A	221	224	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	368	first strand
Strand 2	A	374	376	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	45	first strand
Strand 2	B	25	32	parallel
Strand 3	B	1	7	parallel
Strand 4	B	66	68	parallel
Strand 5	B	89	90	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	123	first strand
Strand 2	B	182	186	anti-parallel
Strand 3	B	140	143	anti-parallel
Strand 4	B	154	156	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	206	first strand
Strand 2	B	191	200	anti-parallel
Strand 3	B	265	274	anti-parallel
Strand 4	B	280	285	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	212	first strand
Strand 2	B	229	232	anti-parallel
Strand 3	B	328	335	anti-parallel
Strand 4	B	380	388	anti-parallel
Strand 5	B	360	363	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	217	first strand
Strand 2	B	221	224	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	374	376	anti-parallel
Strand 3	B	366	368	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VEV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VEV