Analysis of interatomic Contacts of Structural Units in PDB entry:
5VF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VF5 entry

There are 2 chains in PDB entry 5VF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5HIS 66
A
 ASP 68HIS 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5VF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 10Right-handed 310
Helix 2
AA2
A
15 19Right-handed 310
Helix 3
AA3
A
35 39Right-handed 310
Helix 4
AA4
A
40 47Right-handed 310
Helix 5
AA5
A
148 153Right-handed 310
Helix 6
AA6
A
154 163Right-handed alpha
Helix 7
AA7
A
165 173Right-handed alpha
Helix 8
AA8
A
185 193Right-handed alpha
Helix 9
AA9
A
235 239Right-handed 310
Helix 10
AB1
A
359 364Right-handed 310
Helix 11
AB2
A
365 374Right-handed alpha
Helix 12
AB3
A
376 386Right-handed alpha
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There are 6 sheets in PDB entry 5VF5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
318 321anti-parallel
Strand 3
A
265 272anti-parallel
Strand 4
A
337 344anti-parallel
Strand 5
A
243 250anti-parallel
Strand 6
A
225 230anti-parallel
Strand 7
A
220 222anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
49 56anti-parallel
Strand 4
A
120 128anti-parallel
Strand 5
A
69 77anti-parallel
Strand 6
A
100 103anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 96first strand
Strand 2
A
79 85anti-parallel
Strand 3
A
108 113anti-parallel
Strand 4
A
60 67anti-parallel
Strand 5
A
137 139anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 96first strand
Strand 2
A
79 85anti-parallel
Strand 3
A
108 113anti-parallel
Strand 4
A
60 67anti-parallel
Strand 5
A
181 183anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 313first strand
Strand 2
A
275 281anti-parallel
Strand 3
A
327 331anti-parallel
Strand 4
A
254 261anti-parallel
Strand 5
A
351 353anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 313first strand
Strand 2
A
275 281anti-parallel
Strand 3
A
327 331anti-parallel
Strand 4
A
254 261anti-parallel
Strand 5
A
392 394anti-parallel
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