Analysis of interatomic Contacts of Structural Units in PDB entry:
5VF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VF6 entry

There is 1 chain in PDB entry 5VF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2SER 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 5VF6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 80Right-handed 310
Helix 2
AA2
A
151 155Right-handed 310
Helix 3
AA3
A
210 214Right-handed 310
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There are 6 sheets in PDB entry 5VF6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
100 104parallel
Strand 3
A
81 87anti-parallel
Strand 4
A
30 34anti-parallel
Strand 5
A
42 45anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
100 104parallel
Strand 3
A
81 87anti-parallel
Strand 4
A
95 96anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 21first strand
Strand 2
A
67 73anti-parallel
Strand 3
A
59 64anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 130first strand
Strand 2
A
141 148anti-parallel
Strand 3
A
201 206anti-parallel
Strand 4
A
191 196anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
239 243parallel
Strand 3
A
215 222anti-parallel
Strand 4
A
157 162anti-parallel
Strand 5
A
168 174anti-parallel
Strand 6
A
181 183anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
239 243parallel
Strand 3
A
215 222anti-parallel
Strand 4
A
232 235anti-parallel
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