Analysis of interatomic Contacts of Structural Units in PDB entry:
5VFA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VFA entry

There are 2 chains in PDB entry 5VFA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2GLY 230
B
 GLY 2GLY 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 5VFA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 25Right-handed alpha
Helix 2
AA2
A
34 45Right-handed alpha
Helix 3
AA3
A
60 70Right-handed alpha
Helix 4
AA4
A
82 89Right-handed alpha
Helix 5
AA5
A
89 97Right-handed alpha
Helix 6
AA6
A
106 125Right-handed alpha
Helix 7
AA7
A
159 172Right-handed alpha
Helix 8
AA8
A
177 186Right-handed alpha
Helix 9
AA9
A
194 209Right-handed alpha
Helix 10
AB1
B
11 24Right-handed alpha
Helix 11
AB2
B
34 45Right-handed alpha
Helix 12
AB3
B
60 70Right-handed alpha
Helix 13
AB4
B
82 89Right-handed alpha
Helix 14
AB5
B
89 97Right-handed alpha
Helix 15
AB6
B
106 125Right-handed alpha
Helix 16
AB7
B
159 171Right-handed alpha
Helix 17
AB8
B
177 186Right-handed alpha
Helix 18
AB9
B
194 209Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5VFA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
4 7parallel
Strand 3
A
49 52parallel
Strand 4
A
77 81parallel
Strand 5
A
99 102parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 137first strand
Strand 2
A
140 143anti-parallel
Strand 3
A
148 151anti-parallel
Strand 4
A
154 156anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 220first strand
Strand 2
A
224 227anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
4 8parallel
Strand 3
B
49 52parallel
Strand 4
B
77 81parallel
Strand 5
B
99 102parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 137first strand
Strand 2
B
140 143anti-parallel
Strand 3
B
148 151anti-parallel
Strand 4
B
154 156anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 220first strand
Strand 2
B
224 227anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il