Analysis of interatomic Contacts of Structural Units in PDB entry:
5VFZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VFZ entry

There is 1 chain in PDB entry 5VFZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 15GLU 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5VFZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 33Right-handed alpha
Helix 2
AA2
A
36 55Right-handed alpha
Helix 3
AA3
A
57 61Right-handed 310
Helix 4
AA4
A
62 73Right-handed alpha
Helix 5
AA5
A
77 98Right-handed alpha
Helix 6
AA6
A
104 109Right-handed 310
Helix 7
AA7
A
123 133Right-handed alpha
Helix 8
AA8
A
136 150Right-handed alpha
Helix 9
AA9
A
152 158Right-handed alpha
Helix 10
AB1
A
160 162Right-handed 310
Helix 11
AB2
A
186 194Right-handed alpha
Helix 12
AB3
A
212 227Right-handed alpha
Helix 13
AB4
A
232 247Right-handed alpha
Helix 14
AB5
A
250 259Right-handed alpha
Helix 15
AB6
A
264 270Right-handed alpha
Helix 16
AB7
A
273 283Right-handed alpha
Helix 17
AB8
A
306 313Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5VFZ.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
170 174anti-parallel
Strand 3
A
180 184anti-parallel
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