Analysis of interatomic Contacts of Structural Units in PDB entry:
5VG2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VG2 entry

There are 4 chains in PDB entry 5VG2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
U
 CYS 56ALA 259
A
 CYS 56ALA 259
B
 CYS 56ALA 259
C
 CYS 56ALA 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5VG2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
U
189 198Right-handed alpha
Helix 2
AA2
U
201 205Right-handed 310
Helix 3
AA3
U
211 214Right-handed 310
Helix 4
AA4
U
215 221Right-handed alpha
Helix 5
AA5
U
222 227Right-handed 310
Helix 6
AA6
U
232 235Right-handed 310
Helix 7
AA7
A
189 198Right-handed alpha
Helix 8
AA8
A
201 205Right-handed 310
Helix 9
AA9
A
211 214Right-handed 310
Helix 10
AB1
A
215 221Right-handed alpha
Helix 11
AB2
A
222 227Right-handed 310
Helix 12
AB3
A
232 236Right-handed 310
Helix 13
AB4
B
189 198Right-handed alpha
Helix 14
AB5
B
201 205Right-handed 310
Helix 15
AB6
B
211 214Right-handed 310
Helix 16
AB7
B
215 221Right-handed alpha
Helix 17
AB8
B
222 227Right-handed 310
Helix 18
AB9
B
232 235Right-handed 310
Helix 19
AC1
C
189 198Right-handed alpha
Helix 20
AC2
C
201 205Right-handed 310
Helix 21
AC3
C
211 214Right-handed 310
Helix 22
AC4
C
215 221Right-handed alpha
Helix 23
AC5
C
222 227Right-handed 310
Helix 24
AC6
C
232 236Right-handed 310
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There are 8 sheets in PDB entry 5VG2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
152 158first strand
Strand 2
U
86 95anti-parallel
Strand 3
U
240 248parallel
Strand 4
U
229 230anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
142 146first strand
Strand 2
U
106 110anti-parallel
Strand 3
U
170 176anti-parallel
Strand 4
U
179 186anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 158first strand
Strand 2
A
86 95anti-parallel
Strand 3
A
240 248parallel
Strand 4
A
229 230anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
170 176anti-parallel
Strand 4
A
179 186anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 158first strand
Strand 2
B
86 95anti-parallel
Strand 3
B
240 248parallel
Strand 4
B
229 230anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 146first strand
Strand 2
B
106 110anti-parallel
Strand 3
B
169 176anti-parallel
Strand 4
B
179 187anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
152 158first strand
Strand 2
C
86 95anti-parallel
Strand 3
C
240 248parallel
Strand 4
C
229 230anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
142 146first strand
Strand 2
C
106 110anti-parallel
Strand 3
C
170 176anti-parallel
Strand 4
C
179 186anti-parallel
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