Analysis of interatomic Contacts of Structural Units in PDB entry:
5VG3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VG3 entry

There are 3 chains in PDB entry 5VG3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 382
B	ASP 6	LYS 381
C	ASP 6	LYS 382

There are 36 helices in PDB entry 5VG3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	31	Right-handed alpha
Helix 2	AA2	A	31	36	Right-handed alpha
Helix 3	AA3	A	53	55	Right-handed 310
Helix 4	AA4	A	161	165	Right-handed 310
Helix 5	AA5	A	168	174	Right-handed alpha
Helix 6	AA6	A	176	185	Right-handed alpha
Helix 7	AA7	A	188	192	Right-handed 310
Helix 8	AA8	A	209	214	Right-handed alpha
Helix 9	AA9	A	231	233	Right-handed 310
Helix 10	AB1	A	345	351	Right-handed alpha
Helix 11	AB2	A	353	362	Right-handed alpha
Helix 12	AB3	A	364	369	Right-handed alpha
Helix 13	AB4	B	24	31	Right-handed alpha
Helix 14	AB5	B	31	36	Right-handed alpha
Helix 15	AB6	B	53	55	Right-handed 310
Helix 16	AB7	B	161	165	Right-handed 310
Helix 17	AB8	B	168	174	Right-handed alpha
Helix 18	AB9	B	176	185	Right-handed alpha
Helix 19	AC1	B	188	192	Right-handed 310
Helix 20	AC2	B	209	214	Right-handed alpha
Helix 21	AC3	B	231	233	Right-handed 310
Helix 22	AC4	B	345	351	Right-handed alpha
Helix 23	AC5	B	353	362	Right-handed alpha
Helix 24	AC6	B	364	369	Right-handed alpha
Helix 25	AC7	C	24	31	Right-handed alpha
Helix 26	AC8	C	31	36	Right-handed alpha
Helix 27	AC9	C	53	55	Right-handed 310
Helix 28	AD1	C	161	165	Right-handed 310
Helix 29	AD2	C	168	174	Right-handed alpha
Helix 30	AD3	C	176	185	Right-handed alpha
Helix 31	AD4	C	188	192	Right-handed 310
Helix 32	AD5	C	209	214	Right-handed alpha
Helix 33	AD6	C	231	233	Right-handed 310
Helix 34	AD7	C	345	351	Right-handed alpha
Helix 35	AD8	C	353	362	Right-handed alpha
Helix 36	AD9	C	364	369	Right-handed alpha

There are 27 sheets in PDB entry 5VG3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	15	16	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	51	first strand
Strand 2	A	309	313	anti-parallel
Strand 3	A	280	286	anti-parallel
Strand 4	A	329	335	anti-parallel
Strand 5	A	258	264	anti-parallel
Strand 6	A	241	246	anti-parallel
Strand 7	A	236	238	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	63	68	anti-parallel
Strand 3	A	80	86	anti-parallel
Strand 4	A	140	155	anti-parallel
Strand 5	A	91	96	anti-parallel
Strand 6	A	166	167	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	91	96	anti-parallel
Strand 3	A	201	202	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	91	96	anti-parallel
Strand 3	A	140	155	anti-parallel
Strand 4	A	101	115	anti-parallel
Strand 5	A	130	134	anti-parallel
Strand 6	A	227	229	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	229	first strand
Strand 2	A	130	134	anti-parallel
Strand 3	A	101	115	anti-parallel
Strand 4	A	121	127	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	127	first strand
Strand 2	A	101	115	anti-parallel
Strand 3	A	140	155	anti-parallel
Strand 4	A	80	86	anti-parallel
Strand 5	A	63	68	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	306	first strand
Strand 2	A	288	296	anti-parallel
Strand 3	A	319	323	anti-parallel
Strand 4	A	268	274	anti-parallel
Strand 5	A	343	344	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	306	first strand
Strand 2	A	288	296	anti-parallel
Strand 3	A	319	323	anti-parallel
Strand 4	A	268	274	anti-parallel
Strand 5	A	378	380	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	15	16	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	309	313	anti-parallel
Strand 3	B	280	286	anti-parallel
Strand 4	B	329	335	anti-parallel
Strand 5	B	258	264	anti-parallel
Strand 6	B	241	246	anti-parallel
Strand 7	B	236	237	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	63	68	anti-parallel
Strand 3	B	80	86	anti-parallel
Strand 4	B	140	155	anti-parallel
Strand 5	B	91	96	anti-parallel
Strand 6	B	166	167	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	167	first strand
Strand 2	B	91	96	anti-parallel
Strand 3	B	201	202	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	202	first strand
Strand 2	B	91	96	anti-parallel
Strand 3	B	140	155	anti-parallel
Strand 4	B	101	115	anti-parallel
Strand 5	B	130	134	anti-parallel
Strand 6	B	227	229	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	229	first strand
Strand 2	B	130	134	anti-parallel
Strand 3	B	101	115	anti-parallel
Strand 4	B	121	127	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	127	first strand
Strand 2	B	101	115	anti-parallel
Strand 3	B	140	155	anti-parallel
Strand 4	B	80	86	anti-parallel
Strand 5	B	63	68	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	306	first strand
Strand 2	B	288	296	anti-parallel
Strand 3	B	319	323	anti-parallel
Strand 4	B	268	274	anti-parallel
Strand 5	B	343	344	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	306	first strand
Strand 2	B	288	296	anti-parallel
Strand 3	B	319	323	anti-parallel
Strand 4	B	268	274	anti-parallel
Strand 5	B	378	380	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	15	16	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	51	first strand
Strand 2	C	309	313	anti-parallel
Strand 3	C	280	286	anti-parallel
Strand 4	C	329	335	anti-parallel
Strand 5	C	258	264	anti-parallel
Strand 6	C	241	246	anti-parallel
Strand 7	C	236	238	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	63	68	anti-parallel
Strand 3	C	80	86	anti-parallel
Strand 4	C	140	155	anti-parallel
Strand 5	C	91	96	anti-parallel
Strand 6	C	166	167	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	167	first strand
Strand 2	C	91	96	anti-parallel
Strand 3	C	201	202	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	202	first strand
Strand 2	C	91	96	anti-parallel
Strand 3	C	140	155	anti-parallel
Strand 4	C	101	115	anti-parallel
Strand 5	C	130	134	anti-parallel
Strand 6	C	227	229	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	229	first strand
Strand 2	C	130	134	anti-parallel
Strand 3	C	101	115	anti-parallel
Strand 4	C	121	127	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	127	first strand
Strand 2	C	101	115	anti-parallel
Strand 3	C	140	155	anti-parallel
Strand 4	C	80	86	anti-parallel
Strand 5	C	63	68	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	299	306	first strand
Strand 2	C	288	296	anti-parallel
Strand 3	C	319	323	anti-parallel
Strand 4	C	268	274	anti-parallel
Strand 5	C	343	344	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	299	306	first strand
Strand 2	C	288	296	anti-parallel
Strand 3	C	319	323	anti-parallel
Strand 4	C	268	274	anti-parallel
Strand 5	C	378	380	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VG3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VG3