Analysis of interatomic Contacts of Structural Units in PDB entry:
5VG6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VG6 entry

There are 5 chains in PDB entry 5VG6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	TYR 319
B	ALA 5	TYR 319
C	ALA 5	TYR 319
D	ALA 8	TYR 319
E	SER 6	VAL 73

There are124 helices in PDB entry 5VG6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	29	Right-handed alpha
Helix 2	AA2	A	47	49	Right-handed 310
Helix 3	AA3	A	62	67	Right-handed 310
Helix 4	AA4	A	80	85	Right-handed alpha
Helix 5	AA5	A	99	119	Right-handed alpha
Helix 6	AA6	A	120	130	Right-handed alpha
Helix 7	AA7	A	140	143	Right-handed 310
Helix 8	AA8	A	152	165	Right-handed alpha
Helix 9	AA9	A	190	197	Right-handed alpha
Helix 10	AB1	A	216	223	Right-handed alpha
Helix 11	AB2	A	234	238	Right-handed 310
Helix 12	AB3	A	239	249	Right-handed alpha
Helix 13	AB4	A	288	306	Right-handed alpha
Helix 14	AB5	B	17	29	Right-handed alpha
Helix 15	AB6	B	47	49	Right-handed 310
Helix 16	AB7	B	62	67	Right-handed 310
Helix 17	AB8	B	80	85	Right-handed alpha
Helix 18	AB9	B	99	119	Right-handed alpha
Helix 19	AC1	B	120	130	Right-handed alpha
Helix 20	AC2	B	140	143	Right-handed 310
Helix 21	AC3	B	152	165	Right-handed alpha
Helix 22	AC4	B	190	197	Right-handed alpha
Helix 23	AC5	B	216	223	Right-handed alpha
Helix 24	AC6	B	234	238	Right-handed 310
Helix 25	AC7	B	239	249	Right-handed alpha
Helix 26	AC8	B	288	306	Right-handed alpha
Helix 27	AC9	C	17	29	Right-handed alpha
Helix 28	AD1	C	47	49	Right-handed 310
Helix 29	AD2	C	62	67	Right-handed 310
Helix 30	AD3	C	80	85	Right-handed alpha
Helix 31	AD4	C	99	119	Right-handed alpha
Helix 32	AD5	C	120	130	Right-handed alpha
Helix 33	AD6	C	140	143	Right-handed 310
Helix 34	AD7	C	152	165	Right-handed alpha
Helix 35	AD8	C	190	197	Right-handed alpha
Helix 36	AD9	C	216	223	Right-handed alpha
Helix 37	AE1	C	234	238	Right-handed 310
Helix 38	AE2	C	239	249	Right-handed alpha
Helix 39	AE3	C	288	306	Right-handed alpha
Helix 40	AE4	D	17	29	Right-handed alpha
Helix 41	AE5	D	47	51	Right-handed 310
Helix 42	AE6	D	62	67	Right-handed 310
Helix 43	AE7	D	80	85	Right-handed alpha
Helix 44	AE8	D	99	119	Right-handed alpha
Helix 45	AE9	D	120	131	Right-handed alpha
Helix 46	AF1	D	140	143	Right-handed 310
Helix 47	AF2	D	152	165	Right-handed alpha
Helix 48	AF3	D	190	197	Right-handed alpha
Helix 49	AF4	D	216	223	Right-handed alpha
Helix 50	AF5	D	234	238	Right-handed 310
Helix 51	AF6	D	239	249	Right-handed alpha
Helix 52	AF7	D	288	306	Right-handed alpha
Helix 53	AF8	E	17	29	Right-handed alpha
Helix 54	AF9	E	47	49	Right-handed 310
Helix 55	AG1	E	62	67	Right-handed 310
Helix 56	AG2	E	80	85	Right-handed alpha
Helix 57	AG3	E	99	119	Right-handed alpha
Helix 58	AG4	E	120	130	Right-handed alpha
Helix 59	AG5	E	140	143	Right-handed 310
Helix 60	AG6	E	152	165	Right-handed alpha
Helix 61	AG7	E	190	197	Right-handed alpha
Helix 62	AG8	E	216	223	Right-handed alpha
Helix 63	AG9	E	234	238	Right-handed 310
Helix 64	AH1	E	239	249	Right-handed alpha
Helix 65	AH2	E	288	306	Right-handed alpha
Helix 66	AH3	F	17	29	Right-handed alpha
Helix 67	AH4	F	47	51	Right-handed 310
Helix 68	AH5	F	62	67	Right-handed 310
Helix 69	AH6	F	80	85	Right-handed alpha
Helix 70	AH7	F	99	119	Right-handed alpha
Helix 71	AH8	F	120	130	Right-handed alpha
Helix 72	AH9	F	140	143	Right-handed 310
Helix 73	AI1	F	152	165	Right-handed alpha
Helix 74	AI2	F	190	197	Right-handed alpha
Helix 75	AI3	F	216	223	Right-handed alpha
Helix 76	AI4	F	234	238	Right-handed 310
Helix 77	AI5	F	239	249	Right-handed alpha
Helix 78	AI6	F	288	306	Right-handed alpha
Helix 79	AI7	G	80	85	Right-handed alpha
Helix 80	AI8	G	99	119	Right-handed alpha
Helix 81	AI9	G	120	130	Right-handed alpha
Helix 82	AJ1	G	140	143	Right-handed 310
Helix 83	AJ2	G	152	165	Right-handed alpha
Helix 84	AJ3	G	190	197	Right-handed alpha
Helix 85	AJ4	G	216	223	Right-handed alpha
Helix 86	AJ5	G	234	238	Right-handed 310
Helix 87	AJ6	G	239	249	Right-handed alpha
Helix 88	AJ7	G	288	306	Right-handed alpha
Helix 89	AJ8	H	80	85	Right-handed alpha
Helix 90	AJ9	H	99	119	Right-handed alpha
Helix 91	AK1	H	120	130	Right-handed alpha
Helix 92	AK2	H	140	143	Right-handed 310
Helix 93	AK3	H	152	165	Right-handed alpha
Helix 94	AK4	H	190	197	Right-handed alpha
Helix 95	AK5	H	216	223	Right-handed alpha
Helix 96	AK6	H	234	238	Right-handed 310
Helix 97	AK7	H	239	249	Right-handed alpha
Helix 98	AK8	H	288	306	Right-handed alpha
Helix 99	AK9	I	17	29	Right-handed alpha
Helix 100	AL1	I	47	49	Right-handed 310
Helix 101	AL2	I	62	67	Right-handed 310
Helix 102	AL3	I	80	85	Right-handed alpha
Helix 103	AL4	I	99	119	Right-handed alpha
Helix 104	AL5	I	120	130	Right-handed alpha
Helix 105	AL6	I	140	143	Right-handed 310
Helix 106	AL7	I	152	165	Right-handed alpha
Helix 107	AL8	I	190	197	Right-handed alpha
Helix 108	AL9	I	216	223	Right-handed alpha
Helix 109	AM1	I	234	238	Right-handed 310
Helix 110	AM2	I	239	249	Right-handed alpha
Helix 111	AM3	I	288	306	Right-handed alpha
Helix 112	AM4	J	17	29	Right-handed alpha
Helix 113	AM5	J	47	49	Right-handed 310
Helix 114	AM6	J	62	67	Right-handed 310
Helix 115	AM7	J	80	85	Right-handed alpha
Helix 116	AM8	J	99	119	Right-handed alpha
Helix 117	AM9	J	120	130	Right-handed alpha
Helix 118	AN1	J	140	143	Right-handed 310
Helix 119	AN2	J	152	165	Right-handed alpha
Helix 120	AN3	J	190	197	Right-handed alpha
Helix 121	AN4	J	216	223	Right-handed alpha
Helix 122	AN5	J	234	238	Right-handed 310
Helix 123	AN6	J	239	249	Right-handed alpha
Helix 124	AN7	J	288	306	Right-handed alpha

There are 18 sheets in PDB entry 5VG6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	8	12	parallel
Strand 3	A	51	56	parallel
Strand 4	A	72	75	parallel
Strand 5	A	94	96	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	186	first strand
Strand 2	A	168	173	parallel
Strand 3	A	145	149	parallel
Strand 4	A	200	203	parallel
Strand 5	A	227	231	parallel
Strand 6	A	252	257	parallel
Strand 7	A	277	279	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	36	first strand
Strand 2	B	8	12	parallel
Strand 3	B	51	56	parallel
Strand 4	B	72	75	parallel
Strand 5	B	94	96	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	186	first strand
Strand 2	B	168	173	parallel
Strand 3	B	145	149	parallel
Strand 4	B	200	203	parallel
Strand 5	B	227	231	parallel
Strand 6	B	252	257	parallel
Strand 7	B	277	279	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	8	12	parallel
Strand 3	C	51	56	parallel
Strand 4	C	72	75	parallel
Strand 5	C	94	96	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	186	first strand
Strand 2	C	168	173	parallel
Strand 3	C	145	149	parallel
Strand 4	C	200	203	parallel
Strand 5	C	227	231	parallel
Strand 6	C	252	257	parallel
Strand 7	C	277	279	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	36	first strand
Strand 2	D	9	12	parallel
Strand 3	D	53	56	parallel
Strand 4	D	72	75	parallel
Strand 5	D	94	96	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	186	first strand
Strand 2	D	168	173	parallel
Strand 3	D	145	149	parallel
Strand 4	D	200	203	parallel
Strand 5	D	227	231	parallel
Strand 6	D	252	257	parallel
Strand 7	D	277	279	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	36	first strand
Strand 2	E	8	12	parallel
Strand 3	E	51	56	parallel
Strand 4	E	72	75	parallel
Strand 5	E	94	96	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	186	first strand
Strand 2	E	168	173	parallel
Strand 3	E	145	149	parallel
Strand 4	E	200	203	parallel
Strand 5	E	227	231	parallel
Strand 6	E	252	257	parallel
Strand 7	E	277	279	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	36	first strand
Strand 2	F	9	12	parallel
Strand 3	F	53	56	parallel
Strand 4	F	72	75	parallel
Strand 5	F	94	96	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	183	186	first strand
Strand 2	F	168	173	parallel
Strand 3	F	145	149	parallel
Strand 4	F	200	203	parallel
Strand 5	F	227	231	parallel
Strand 6	F	252	257	parallel
Strand 7	F	277	279	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	183	186	first strand
Strand 2	G	168	173	parallel
Strand 3	G	145	149	parallel
Strand 4	G	200	203	parallel
Strand 5	G	227	231	parallel
Strand 6	G	252	257	parallel
Strand 7	G	277	279	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	183	186	first strand
Strand 2	H	168	173	parallel
Strand 3	H	145	149	parallel
Strand 4	H	200	203	parallel
Strand 5	H	227	231	parallel
Strand 6	H	252	257	parallel
Strand 7	H	277	279	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	34	36	first strand
Strand 2	I	8	12	parallel
Strand 3	I	51	56	parallel
Strand 4	I	72	75	parallel
Strand 5	I	94	96	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	183	186	first strand
Strand 2	I	168	173	parallel
Strand 3	I	145	149	parallel
Strand 4	I	200	203	parallel
Strand 5	I	227	231	parallel
Strand 6	I	252	257	parallel
Strand 7	I	277	279	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	36	first strand
Strand 2	J	8	12	parallel
Strand 3	J	51	56	parallel
Strand 4	J	72	75	parallel
Strand 5	J	94	96	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	183	186	first strand
Strand 2	J	168	173	parallel
Strand 3	J	145	149	parallel
Strand 4	J	200	203	parallel
Strand 5	J	227	231	parallel
Strand 6	J	252	257	parallel
Strand 7	J	277	279	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VG6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VG6