Analysis of interatomic Contacts of Structural Units in PDB entry:
5VGB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VGB entry

There are 2 chains in PDB entry 5VGB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLN 142
B
 ALA 1LEU 85
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5VGB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 15Right-handed alpha
Helix 2
AA2
A
16 28Right-handed alpha
Helix 3
AA3
A
36 49Right-handed alpha
Helix 4
AA4
A
61 65Right-handed 310
Helix 5
AA5
A
78 83Right-handed alpha
Helix 6
AA6
A
86 88Right-handed 310
Helix 7
AA7
A
95 102Right-handed alpha
Helix 8
AA8
A
105 110Right-handed alpha
Helix 9
AA9
A
111 115Right-handed 310
Helix 10
AB1
A
116 129Right-handed alpha
Helix 11
AB2
A
132 140Right-handed alpha
Helix 12
AB3
B
34 38Right-handed alpha
Helix 13
AB4
B
46 48Right-handed 310
Helix 14
AB5
B
49 54Right-handed alpha
Helix 15
AB6
B
56 68Right-handed alpha
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There are 2 sheets in PDB entry 5VGB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 75first strand
Strand 2
A
90 94anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
27 33parallel
Strand 3
B
17 24anti-parallel
Strand 4
B
71 78anti-parallel
Strand 5
B
81 84anti-parallel
Strand 6
B
4 7anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il