Analysis of interatomic Contacts of Structural Units in PDB entry:
5VGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VGM entry

There are 8 chains in PDB entry 5VGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0ALA 97
A
 LEU 99ALA 258
A
 GLY 260GLY 260
A
 ALA 262LYS 342
B
 SER -2ALA 97
B
 LEU 99ALA 258
B
 GLY 260GLY 260
B
 ALA 262LYS 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5VGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 20Right-handed 310
Helix 2
AA2
A
21 30Right-handed alpha
Helix 3
AA3
A
48 62Right-handed alpha
Helix 4
AA4
A
81 91Right-handed alpha
Helix 5
AA5
A
114 117Right-handed 310
Helix 6
AA6
A
118 129Right-handed alpha
Helix 7
AA7
A
144 146Right-handed 310
Helix 8
AA8
A
147 156Right-handed alpha
Helix 9
AA9
A
156 164Right-handed alpha
Helix 10
AB1
A
176 186Right-handed alpha
Helix 11
AB2
A
196 201Right-handed alpha
Helix 12
AB3
A
202 208Right-handed alpha
Helix 13
AB4
A
212 216Right-handed 310
Helix 14
AB5
A
223 237Right-handed alpha
Helix 15
AB6
A
251 256Right-handed alpha
Helix 16
AB7
A
269 281Right-handed alpha
Helix 17
AB8
A
283 285Right-handed 310
Helix 18
AB9
A
286 293Right-handed alpha
Helix 19
AC1
A
293 300Right-handed alpha
Helix 20
AC2
B
18 20Right-handed 310
Helix 21
AC3
B
21 31Right-handed alpha
Helix 22
AC4
B
48 62Right-handed alpha
Helix 23
AC5
B
81 91Right-handed alpha
Helix 24
AC6
B
114 117Right-handed 310
Helix 25
AC7
B
118 129Right-handed alpha
Helix 26
AC8
B
144 146Right-handed 310
Helix 27
AC9
B
147 156Right-handed alpha
Helix 28
AD1
B
156 164Right-handed alpha
Helix 29
AD2
B
176 186Right-handed alpha
Helix 30
AD3
B
196 201Right-handed alpha
Helix 31
AD4
B
202 208Right-handed alpha
Helix 32
AD5
B
212 216Right-handed 310
Helix 33
AD6
B
223 236Right-handed alpha
Helix 34
AD7
B
251 256Right-handed alpha
Helix 35
AD8
B
269 281Right-handed alpha
Helix 36
AD9
B
283 285Right-handed 310
Helix 37
AE1
B
286 293Right-handed alpha
Helix 38
AE2
B
293 300Right-handed alpha
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There are 6 sheets in PDB entry 5VGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
307 316anti-parallel
Strand 3
A
336 342anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 14first strand
Strand 2
A
35 38parallel
Strand 3
A
69 75parallel
Strand 4
A
94 99parallel
Strand 5
A
131 134parallel
Strand 6
A
169 171parallel
Strand 7
A
190 194parallel
Strand 8
A
241 243parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 323first strand
Strand 2
A
326 328anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
307 316anti-parallel
Strand 3
B
336 342anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 14first strand
Strand 2
B
35 38parallel
Strand 3
B
69 75parallel
Strand 4
B
94 99parallel
Strand 5
B
131 134parallel
Strand 6
B
169 171parallel
Strand 7
B
190 194parallel
Strand 8
B
241 243parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 323first strand
Strand 2
B
326 328anti-parallel
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