Analysis of interatomic Contacts of Structural Units in PDB entry:
5VGP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VGP entry

There are 2 chains in PDB entry 5VGP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 239	SER 447
B	GLY 239	SER 447

There are 10 helices in PDB entry 5VGP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	249	255	Right-handed alpha
Helix 2	AA2	A	312	318	Right-handed alpha
Helix 3	AA3	A	359	363	Right-handed 310
Helix 4	AA4	A	417	422	Right-handed alpha
Helix 5	AA5	A	435	439	Right-handed 310
Helix 6	AA6	B	249	255	Right-handed alpha
Helix 7	AA7	B	312	318	Right-handed alpha
Helix 8	AA8	B	358	363	Right-handed 310
Helix 9	AA9	B	417	422	Right-handed alpha
Helix 10	AB1	B	435	439	Right-handed 310

There are 12 sheets in PDB entry 5VGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	246	first strand
Strand 2	A	261	269	anti-parallel
Strand 3	A	303	310	anti-parallel
Strand 4	A	291	292	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	246	first strand
Strand 2	A	261	269	anti-parallel
Strand 3	A	303	310	anti-parallel
Strand 4	A	296	297	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	287	first strand
Strand 2	A	277	282	anti-parallel
Strand 3	A	322	327	anti-parallel
Strand 4	A	335	339	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	354	first strand
Strand 2	A	365	375	anti-parallel
Strand 3	A	407	416	anti-parallel
Strand 4	A	394	396	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	354	first strand
Strand 2	A	365	375	anti-parallel
Strand 3	A	407	416	anti-parallel
Strand 4	A	400	401	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	390	first strand
Strand 2	A	381	386	anti-parallel
Strand 3	A	426	431	anti-parallel
Strand 4	A	440	444	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	246	first strand
Strand 2	B	261	269	anti-parallel
Strand 3	B	303	310	anti-parallel
Strand 4	B	291	292	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	246	first strand
Strand 2	B	261	269	anti-parallel
Strand 3	B	303	310	anti-parallel
Strand 4	B	296	297	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	287	first strand
Strand 2	B	277	282	anti-parallel
Strand 3	B	322	327	anti-parallel
Strand 4	B	335	339	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	354	first strand
Strand 2	B	365	375	anti-parallel
Strand 3	B	407	416	anti-parallel
Strand 4	B	394	396	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	354	first strand
Strand 2	B	365	375	anti-parallel
Strand 3	B	407	416	anti-parallel
Strand 4	B	400	401	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	391	first strand
Strand 2	B	381	386	anti-parallel
Strand 3	B	426	431	anti-parallel
Strand 4	B	440	444	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VGP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VGP