Analysis of interatomic Contacts of Structural Units in PDB entry:
5VGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VGV entry

There is 1 chain in PDB entry 5VGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2LEU 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5VGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 100Right-handed alpha
Helix 2
AA2
A
101 114Right-handed alpha
Helix 3
AA3
A
130 132Right-handed 310
Helix 4
AA4
A
174 178Right-handed 310
Helix 5
AA5
A
199 204Right-handed alpha
Helix 6
AA6
A
216 233Right-handed alpha
Helix 7
AA7
A
248 255Right-handed alpha
Helix 8
AA8
A
260 267Right-handed alpha
Helix 9
AA9
A
269 274Right-handed 310
Helix 10
AB1
A
275 300Right-handed alpha
Helix 11
AB2
A
309 321Right-handed alpha
Helix 12
AB3
A
334 347Right-handed alpha
Helix 13
AB4
A
350 359Right-handed alpha
Helix 14
AB5
A
398 405Right-handed 310
Helix 15
AB6
A
409 413Right-handed 310
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There are 5 sheets in PDB entry 5VGV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
134 138anti-parallel
Strand 3
A
19 23anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
42 45anti-parallel
Strand 6
A
151 154parallel
Strand 7
A
184 187parallel
Strand 8
A
165 166anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
302 303parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 214first strand
Strand 2
A
192 196anti-parallel
Strand 3
A
372 375anti-parallel
Strand 4
A
414 418anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 244first strand
Strand 2
A
257 259anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 325first strand
Strand 2
A
331 332anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il