Analysis of interatomic Contacts of Structural Units in PDB entry:
5VH2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VH2 entry

There are 4 chains in PDB entry 5VH2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 1179	ASP 1387
B	ASN 1179	LEU 1386
C	ASP 1180	GLU 1388
D	ASP 1180	GLU 1388

There are 9 helices in PDB entry 5VH2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1215	1219	Right-handed 310
Helix 2	AA2	A	1332	1338	Right-handed alpha
Helix 3	AA3	A	1355	1359	Right-handed 310
Helix 4	AA4	B	1215	1219	Right-handed 310
Helix 5	AA5	B	1332	1338	Right-handed alpha
Helix 6	AA6	C	1332	1338	Right-handed alpha
Helix 7	AA7	C	1355	1359	Right-handed 310
Helix 8	AA8	D	1332	1338	Right-handed alpha
Helix 9	AA9	D	1355	1359	Right-handed 310

There are 24 sheets in PDB entry 5VH2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1184	1185	first strand
Strand 2	A	1210	1211	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1189	1196	first strand
Strand 2	A	1271	1281	parallel
Strand 3	A	1255	1264	anti-parallel
Strand 4	A	1221	1227	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1204	1207	first strand
Strand 2	A	1241	1244	anti-parallel
Strand 3	A	1233	1235	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1288	1290	first strand
Strand 2	A	1314	1316	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1295	1300	first strand
Strand 2	A	1377	1386	parallel
Strand 3	A	1361	1369	anti-parallel
Strand 4	A	1324	1327	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1308	1311	first strand
Strand 2	A	1347	1350	anti-parallel
Strand 3	A	1339	1341	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1184	1185	first strand
Strand 2	B	1210	1211	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1189	1196	first strand
Strand 2	B	1271	1281	parallel
Strand 3	B	1255	1264	anti-parallel
Strand 4	B	1221	1227	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1204	1207	first strand
Strand 2	B	1241	1244	anti-parallel
Strand 3	B	1233	1235	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1288	1290	first strand
Strand 2	B	1314	1316	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1294	1300	first strand
Strand 2	B	1377	1386	parallel
Strand 3	B	1361	1369	anti-parallel
Strand 4	B	1324	1327	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1308	1311	first strand
Strand 2	B	1347	1350	anti-parallel
Strand 3	B	1339	1341	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1184	1185	first strand
Strand 2	C	1210	1211	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1189	1196	first strand
Strand 2	C	1271	1281	parallel
Strand 3	C	1255	1263	anti-parallel
Strand 4	C	1222	1227	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1204	1207	first strand
Strand 2	C	1241	1244	anti-parallel
Strand 3	C	1233	1235	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1288	1290	first strand
Strand 2	C	1314	1316	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1295	1300	first strand
Strand 2	C	1377	1386	parallel
Strand 3	C	1361	1369	anti-parallel
Strand 4	C	1324	1327	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1308	1311	first strand
Strand 2	C	1347	1350	anti-parallel
Strand 3	C	1339	1341	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1184	1185	first strand
Strand 2	D	1210	1211	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1189	1196	first strand
Strand 2	D	1271	1281	parallel
Strand 3	D	1255	1264	anti-parallel
Strand 4	D	1221	1227	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1204	1207	first strand
Strand 2	D	1241	1244	anti-parallel
Strand 3	D	1233	1235	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1288	1290	first strand
Strand 2	D	1314	1316	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1295	1300	first strand
Strand 2	D	1377	1386	parallel
Strand 3	D	1361	1369	anti-parallel
Strand 4	D	1324	1327	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1308	1311	first strand
Strand 2	D	1347	1350	anti-parallel
Strand 3	D	1339	1341	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VH2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VH2