Analysis of interatomic Contacts of Structural Units in PDB entry:
5VH6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VH6 entry

There is 1 chain in PDB entry 5VH6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0MET 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5VH6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 34Right-handed alpha
Helix 2
AA2
A
89 99Right-handed alpha
Helix 3
AA3
A
113 126Right-handed alpha
Helix 4
AA4
A
143 154Right-handed alpha
Helix 5
AA5
A
168 172Right-handed 310
Helix 6
AA6
A
200 202Right-handed 310
Helix 7
AA7
A
203 220Right-handed alpha
Helix 8
AA8
A
222 231Right-handed alpha
Helix 9
AA9
A
236 250Right-handed alpha
Helix 10
AB1
A
266 278Right-handed alpha
Helix 11
AB2
A
280 284Right-handed 310
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There are 5 sheets in PDB entry 5VH6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
75 80anti-parallel
Strand 3
A
10 16parallel
Strand 4
A
101 107parallel
Strand 5
A
130 135parallel
Strand 6
A
254 258parallel
Strand 7
A
159 161parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 166first strand
Strand 2
A
174 177anti-parallel
Strand 3
A
182 185anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 290first strand
Strand 2
A
297 300anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 351first strand
Strand 2
A
338 342anti-parallel
Strand 3
A
387 389anti-parallel
Strand 4
A
309 316anti-parallel
Strand 5
A
324 331anti-parallel
Strand 6
A
373 377anti-parallel
Strand 7
A
353 357anti-parallel
Strand 8
A
362 365anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 335first strand
Strand 2
A
367 368anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il