Analysis of interatomic Contacts of Structural Units in PDB entry:
5VH9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VH9 entry

There are 2 chains in PDB entry 5VH9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 1448	MET 4092
B	LEU 140	MET 493

There are120 helices in PDB entry 5VH9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1448	1465	Right-handed alpha
Helix 2	AA2	A	1469	1489	Right-handed alpha
Helix 3	AA3	A	1495	1500	Right-handed alpha
Helix 4	AA4	A	1504	1534	Right-handed alpha
Helix 5	AA5	A	1535	1540	Right-handed 310
Helix 6	AA6	A	1541	1551	Right-handed alpha
Helix 7	AA7	A	1554	1559	Right-handed alpha
Helix 8	AA8	A	1560	1562	Right-handed 310
Helix 9	AA9	A	1599	1602	Right-handed 310
Helix 10	AB1	A	1603	1631	Right-handed alpha
Helix 11	AB2	A	1635	1642	Right-handed alpha
Helix 12	AB3	A	1644	1660	Right-handed alpha
Helix 13	AB4	A	1660	1665	Right-handed alpha
Helix 14	AB5	A	1669	1687	Right-handed alpha
Helix 15	AB6	A	1691	1717	Right-handed alpha
Helix 16	AB7	A	1721	1724	Right-handed 310
Helix 17	AB8	A	1725	1730	Right-handed alpha
Helix 18	AB9	A	1742	1745	Right-handed 310
Helix 19	AC1	A	1772	1788	Right-handed alpha
Helix 20	AC2	A	1802	1814	Right-handed alpha
Helix 21	AC3	A	1827	1842	Right-handed alpha
Helix 22	AC4	A	1854	1875	Right-handed alpha
Helix 23	AC5	A	1901	1905	Right-handed 310
Helix 24	AC6	A	1909	1914	Right-handed alpha
Helix 25	AC7	A	1925	1938	Right-handed alpha
Helix 26	AC8	A	1941	1960	Right-handed alpha
Helix 27	AC9	A	1969	1986	Right-handed alpha
Helix 28	AD1	A	1990	2001	Right-handed alpha
Helix 29	AD2	A	2011	2020	Right-handed alpha
Helix 30	AD3	A	2031	2046	Right-handed alpha
Helix 31	AD4	A	2050	2067	Right-handed alpha
Helix 32	AD5	A	2079	2096	Right-handed alpha
Helix 33	AD6	A	2105	2109	Right-handed 310
Helix 34	AD7	A	2110	2115	Right-handed alpha
Helix 35	AD8	A	2128	2140	Right-handed alpha
Helix 36	AD9	A	2159	2165	Right-handed 310
Helix 37	AE1	A	2166	2171	Right-handed alpha
Helix 38	AE2	A	2203	2208	Right-handed alpha
Helix 39	AE3	A	2216	2220	Right-handed 310
Helix 40	AE4	A	2221	2233	Right-handed alpha
Helix 41	AE5	A	2234	2236	Right-handed 310
Helix 42	AE6	A	2243	2255	Right-handed alpha
Helix 43	AE7	A	2256	2258	Right-handed 310
Helix 44	AE8	A	2261	2271	Right-handed alpha
Helix 45	AE9	A	2279	2298	Right-handed alpha
Helix 46	AF1	A	2306	2326	Right-handed alpha
Helix 47	AF2	A	2331	2339	Right-handed alpha
Helix 48	AF3	A	2340	2345	Right-handed 310
Helix 49	AF4	A	2383	2391	Right-handed 310
Helix 50	AF5	A	2394	2410	Right-handed alpha
Helix 51	AF6	A	2423	2433	Right-handed alpha
Helix 52	AF7	A	2450	2461	Right-handed alpha
Helix 53	AF8	A	2500	2511	Right-handed alpha
Helix 54	AF9	A	2547	2552	Right-handed alpha
Helix 55	AG1	A	2563	2580	Right-handed alpha
Helix 56	AG2	A	2585	2587	Right-handed 310
Helix 57	AG3	A	2588	2607	Right-handed alpha
Helix 58	AG4	A	2608	2613	Right-handed alpha
Helix 59	AG5	A	2619	2634	Right-handed alpha
Helix 60	AG6	A	2640	2656	Right-handed alpha
Helix 61	AG7	A	2657	2660	Right-handed 310
Helix 62	AG8	A	2662	2681	Right-handed alpha
Helix 63	AG9	A	2685	2692	Right-handed alpha
Helix 64	AH1	A	2708	2724	Right-handed alpha
Helix 65	AH2	A	2735	2750	Right-handed alpha
Helix 66	AH3	A	2765	2778	Right-handed alpha
Helix 67	AH4	A	2791	2808	Right-handed alpha
Helix 68	AH5	A	2820	2822	Right-handed 310
Helix 69	AH6	A	2824	2837	Right-handed alpha
Helix 70	AH7	A	2845	2864	Right-handed alpha
Helix 71	AH8	A	2869	2883	Right-handed alpha
Helix 72	AH9	A	2905	2910	Right-handed alpha
Helix 73	AI1	A	2921	2935	Right-handed alpha
Helix 74	AI2	A	2960	2976	Right-handed alpha
Helix 75	AI3	A	2989	3028	Right-handed alpha
Helix 76	AI4	A	3300	3328	Right-handed alpha
Helix 77	AI5	A	3328	3333	Right-handed alpha
Helix 78	AI6	A	3338	3343	Right-handed alpha
Helix 79	AI7	A	3347	3353	Right-handed alpha
Helix 80	AI8	A	3365	3370	Right-handed alpha
Helix 81	AI9	A	3372	3382	Right-handed alpha
Helix 82	AJ1	A	3388	3399	Right-handed alpha
Helix 83	AJ2	A	3412	3423	Right-handed alpha
Helix 84	AJ3	A	3437	3442	Right-handed alpha
Helix 85	AJ4	A	3457	3462	Right-handed alpha
Helix 86	AJ5	A	3465	3472	Right-handed alpha
Helix 87	AJ6	A	3489	3493	Right-handed 310
Helix 88	AJ7	A	3521	3566	Right-handed alpha
Helix 89	AJ8	A	3567	3572	Right-handed 310
Helix 90	AJ9	A	3576	3581	Right-handed alpha
Helix 91	AK1	A	3583	3605	Right-handed alpha
Helix 92	AK2	A	3606	3618	Right-handed alpha
Helix 93	AK3	A	3618	3633	Right-handed alpha
Helix 94	AK4	A	3634	3638	Right-handed 310
Helix 95	AK5	A	3645	3658	Right-handed alpha
Helix 96	AK6	A	3667	3690	Right-handed alpha
Helix 97	AK7	A	3691	3707	Right-handed alpha
Helix 98	AK8	A	3716	3724	Right-handed alpha
Helix 99	AK9	A	3745	3754	Right-handed alpha
Helix 100	AL1	A	3755	3764	Right-handed 310
Helix 101	AL2	A	3773	3778	Right-handed alpha
Helix 102	AL3	A	3795	3808	Right-handed alpha
Helix 103	AL4	A	3818	3836	Right-handed alpha
Helix 104	AL5	A	3844	3846	Right-handed 310
Helix 105	AL6	A	3847	3869	Right-handed alpha
Helix 106	AL7	A	3885	3891	Right-handed alpha
Helix 107	AL8	A	3902	3914	Right-handed alpha
Helix 108	AL9	A	3916	3920	Right-handed 310
Helix 109	AM1	A	3922	3944	Right-handed alpha
Helix 110	AM2	A	3957	3973	Right-handed alpha
Helix 111	AM3	A	3981	3994	Right-handed alpha
Helix 112	AM4	A	4000	4013	Right-handed alpha
Helix 113	AM5	A	4059	4064	Right-handed alpha
Helix 114	AM6	A	4066	4089	Right-handed alpha
Helix 115	AM7	A	4090	4092	Right-handed 310
Helix 116	AM8	B	211	219	Right-handed alpha
Helix 117	AM9	B	263	266	Right-handed 310
Helix 118	AN1	B	351	355	Right-handed 310
Helix 119	AN2	B	362	370	Right-handed 310
Helix 120	AN3	B	474	478	Right-handed 310

There are 21 sheets in PDB entry 5VH9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1569	1575	first strand
Strand 2	A	1578	1584	anti-parallel
Strand 3	A	1589	1597	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1733	1736	first strand
Strand 2	A	1747	1751	anti-parallel
Strand 3	A	1754	1757	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1817	1821	first strand
Strand 2	A	1844	1848	parallel
Strand 3	A	1893	1898	parallel
Strand 4	A	1794	1795	parallel
Strand 5	A	1919	1920	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1878	1881	first strand
Strand 2	A	1884	1887	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2100	2104	first strand
Strand 2	A	2150	2155	parallel
Strand 3	A	2190	2196	parallel
Strand 4	A	2069	2073	parallel
Strand 5	A	2211	2214	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2116	2119	first strand
Strand 2	A	2124	2127	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2175	2177	first strand
Strand 2	A	2183	2185	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2360	2362	first strand
Strand 2	A	2368	2370	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2441	2443	first strand
Strand 2	A	2482	2486	parallel
Strand 3	A	2529	2535	parallel
Strand 4	A	2414	2417	parallel
Strand 5	A	2555	2558	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2462	2465	first strand
Strand 2	A	2472	2475	anti-parallel
Strand 3	A	2522	2526	parallel
Strand 4	A	2515	2517	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2695	2696	first strand
Strand 2	A	2706	2707	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2780	2782	first strand
Strand 2	A	2813	2818	parallel
Strand 3	A	2888	2891	parallel
Strand 4	A	2756	2760	parallel
Strand 5	A	2913	2918	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3497	3498	first strand
Strand 2	A	3405	3408	parallel
Strand 3	A	3514	3516	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3811	3815	first strand
Strand 2	A	3838	3842	parallel
Strand 3	A	3872	3878	parallel
Strand 4	A	3785	3789	parallel
Strand 5	A	3892	3896	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	153	first strand
Strand 2	B	488	492	anti-parallel
Strand 3	B	480	484	anti-parallel
Strand 4	B	461	466	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	163	first strand
Strand 2	B	169	174	anti-parallel
Strand 3	B	179	183	anti-parallel
Strand 4	B	192	194	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	204	first strand
Strand 2	B	221	226	anti-parallel
Strand 3	B	230	236	anti-parallel
Strand 4	B	242	250	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	261	first strand
Strand 2	B	269	274	anti-parallel
Strand 3	B	279	283	anti-parallel
Strand 4	B	289	293	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	306	first strand
Strand 2	B	309	314	anti-parallel
Strand 3	B	319	323	anti-parallel
Strand 4	B	329	333	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	345	first strand
Strand 2	B	372	377	anti-parallel
Strand 3	B	381	386	anti-parallel
Strand 4	B	411	414	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	425	first strand
Strand 2	B	429	434	anti-parallel
Strand 3	B	438	443	anti-parallel
Strand 4	B	449	453	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VH9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VH9