Analysis of interatomic Contacts of Structural Units in PDB entry:
5VHC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VHC entry

There is 1 chain in PDB entry 5VHC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ARG 167	THR 989

There are 37 helices in PDB entry 5VHC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	179	194	Right-handed alpha
Helix 2	AA2	D	196	207	Right-handed alpha
Helix 3	AA3	D	209	214	Right-handed alpha
Helix 4	AA4	D	214	225	Right-handed alpha
Helix 5	AA5	D	237	253	Right-handed alpha
Helix 6	AA6	D	255	258	Right-handed 310
Helix 7	AA7	D	267	282	Right-handed alpha
Helix 8	AA8	D	314	324	Right-handed alpha
Helix 9	AA9	D	342	359	Right-handed alpha
Helix 10	AB1	D	372	380	Right-handed alpha
Helix 11	AB2	D	399	408	Right-handed alpha
Helix 12	AB3	D	436	454	Right-handed alpha
Helix 13	AB4	D	457	467	Right-handed alpha
Helix 14	AB5	D	473	488	Right-handed alpha
Helix 15	AB6	D	499	512	Right-handed alpha
Helix 16	AB7	D	513	518	Right-handed alpha
Helix 17	AB8	D	531	537	Right-handed alpha
Helix 18	AB9	D	538	540	Right-handed 310
Helix 19	AC1	D	554	557	Right-handed 310
Helix 20	AC2	D	594	603	Right-handed alpha
Helix 21	AC3	D	618	623	Right-handed alpha
Helix 22	AC4	D	631	635	Right-handed 310
Helix 23	AC5	D	638	648	Right-handed alpha
Helix 24	AC6	D	652	660	Right-handed alpha
Helix 25	AC7	D	665	679	Right-handed alpha
Helix 26	AC8	D	689	698	Right-handed alpha
Helix 27	AC9	D	701	714	Right-handed alpha
Helix 28	AD1	D	716	728	Right-handed alpha
Helix 29	AD2	D	739	752	Right-handed alpha
Helix 30	AD3	D	756	775	Right-handed alpha
Helix 31	AD4	D	775	786	Right-handed alpha
Helix 32	AD5	D	789	810	Right-handed alpha
Helix 33	AD6	D	820	824	Right-handed 310
Helix 34	AD7	D	829	842	Right-handed alpha
Helix 35	AD8	D	906	914	Right-handed alpha
Helix 36	AD9	D	940	963	Right-handed alpha
Helix 37	AE1	D	974	989	Right-handed alpha

There are 5 sheets in PDB entry 5VHC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	299	301	first strand
Strand 2	D	292	296	anti-parallel
Strand 3	D	308	313	parallel
Strand 4	D	260	265	parallel
Strand 5	D	332	336	parallel
Strand 6	D	363	368	parallel
Strand 7	D	227	232	parallel
Strand 8	D	385	388	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	398	first strand
Strand 2	D	611	615	parallel
Strand 3	D	565	570	parallel
Strand 4	D	492	496	parallel
Strand 5	D	547	552	parallel
Strand 6	D	521	526	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	573	579	first strand
Strand 2	D	586	592	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	891	892	first strand
Strand 2	D	898	899	anti-parallel
Strand 3	D	866	869	parallel
Strand 4	D	856	860	anti-parallel
Strand 5	D	845	851	anti-parallel
Strand 6	D	885	888	anti-parallel
Strand 7	D	902	904	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	917	921	first strand
Strand 2	D	926	930	anti-parallel
Strand 3	D	934	936	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VHC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VHC