Analysis of interatomic Contacts of Structural Units in PDB entry:
5VHE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VHE entry

There are 2 chains in PDB entry 5VHE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 57THR 991
B
 A 1 T 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 5VHE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 85Right-handed alpha
Helix 2
AA2
A
93 108Right-handed alpha
Helix 3
AA3
A
162 168Right-handed alpha
Helix 4
AA4
A
179 195Right-handed alpha
Helix 5
AA5
A
196 208Right-handed alpha
Helix 6
AA6
A
209 214Right-handed alpha
Helix 7
AA7
A
214 224Right-handed alpha
Helix 8
AA8
A
241 252Right-handed alpha
Helix 9
AA9
A
267 282Right-handed alpha
Helix 10
AB1
A
314 321Right-handed alpha
Helix 11
AB2
A
342 359Right-handed alpha
Helix 12
AB3
A
372 380Right-handed alpha
Helix 13
AB4
A
399 408Right-handed alpha
Helix 14
AB5
A
428 456Right-handed alpha
Helix 15
AB6
A
457 467Right-handed alpha
Helix 16
AB7
A
473 488Right-handed alpha
Helix 17
AB8
A
499 512Right-handed alpha
Helix 18
AB9
A
531 537Right-handed alpha
Helix 19
AC1
A
554 559Right-handed alpha
Helix 20
AC2
A
594 604Right-handed alpha
Helix 21
AC3
A
620 624Right-handed 310
Helix 22
AC4
A
631 635Right-handed 310
Helix 23
AC5
A
638 648Right-handed alpha
Helix 24
AC6
A
652 660Right-handed alpha
Helix 25
AC7
A
665 679Right-handed alpha
Helix 26
AC8
A
691 697Right-handed alpha
Helix 27
AC9
A
701 714Right-handed alpha
Helix 28
AD1
A
716 728Right-handed alpha
Helix 29
AD2
A
740 752Right-handed alpha
Helix 30
AD3
A
756 775Right-handed alpha
Helix 31
AD4
A
775 787Right-handed alpha
Helix 32
AD5
A
789 811Right-handed alpha
Helix 33
AD6
A
820 824Right-handed 310
Helix 34
AD7
A
829 842Right-handed alpha
Helix 35
AD8
A
908 916Right-handed alpha
Helix 36
AD9
A
941 965Right-handed alpha
Helix 37
AE1
A
978 988Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5VHE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 301first strand
Strand 2
A
292 296anti-parallel
Strand 3
A
308 313parallel
Strand 4
A
260 265parallel
Strand 5
A
332 335parallel
Strand 6
A
363 366parallel
Strand 7
A
227 231parallel
Strand 8
A
385 387parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 398first strand
Strand 2
A
612 615parallel
Strand 3
A
565 570parallel
Strand 4
A
492 496parallel
Strand 5
A
547 552parallel
Strand 6
A
521 526parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 579first strand
Strand 2
A
586 592anti-parallel
Strand 3
A
893 895parallel
Strand 4
A
899 901anti-parallel
Strand 5
A
868 871parallel
Strand 6
A
859 862anti-parallel
Strand 7
A
845 850anti-parallel
Strand 8
A
887 890anti-parallel
Strand 9
A
904 906anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
919 921first strand
Strand 2
A
929 932anti-parallel
Strand 3
A
936 939anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il