Analysis of interatomic Contacts of Structural Units in PDB entry:
5VHJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VHJ entry

There are 6 chains in PDB entry 5VHJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	LEU 8	LYS 213
A	LYS 181	ARG 400
B	LEU 190	ARG 410
D	ASP 171	VAL 406
E	LYS 168	LYS 383
F	LEU 191	HIS 417

There are116 helices in PDB entry 5VHJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	8	16	Right-handed alpha
Helix 2	AA2	G	18	29	Right-handed alpha
Helix 3	AA3	G	30	34	Right-handed 310
Helix 4	AA4	G	42	51	Right-handed alpha
Helix 5	AA5	G	52	63	Right-handed alpha
Helix 6	AA6	G	75	83	Right-handed alpha
Helix 7	AA7	G	85	96	Right-handed alpha
Helix 8	AA8	G	108	116	Right-handed alpha
Helix 9	AA9	G	118	129	Right-handed alpha
Helix 10	AB1	G	141	150	Right-handed alpha
Helix 11	AB2	G	151	161	Right-handed alpha
Helix 12	AB3	G	174	182	Right-handed alpha
Helix 13	AB4	G	184	195	Right-handed alpha
Helix 14	AB5	G	207	212	Right-handed alpha
Helix 15	AB6	A	182	189	Right-handed alpha
Helix 16	AB7	A	192	197	Right-handed alpha
Helix 17	AB8	A	197	203	Right-handed alpha
Helix 18	AB9	A	222	231	Right-handed alpha
Helix 19	AC1	A	243	245	Right-handed 310
Helix 20	AC2	A	251	267	Right-handed alpha
Helix 21	AC3	A	277	280	Right-handed 310
Helix 22	AC4	A	293	307	Right-handed alpha
Helix 23	AC5	A	326	333	Right-handed alpha
Helix 24	AC6	A	334	336	Right-handed 310
Helix 25	AC7	A	350	358	Right-handed alpha
Helix 26	AC8	A	370	375	Right-handed alpha
Helix 27	AC9	A	383	398	Right-handed alpha
Helix 28	AD1	B	191	202	Right-handed alpha
Helix 29	AD2	B	203	206	Right-handed 310
Helix 30	AD3	B	231	239	Right-handed alpha
Helix 31	AD4	B	240	243	Right-handed 310
Helix 32	AD5	B	264	276	Right-handed alpha
Helix 33	AD6	B	302	318	Right-handed alpha
Helix 34	AD7	B	338	342	Right-handed 310
Helix 35	AD8	B	357	369	Right-handed alpha
Helix 36	AD9	B	380	387	Right-handed alpha
Helix 37	AE1	B	392	408	Right-handed alpha
Helix 38	AE2	D	172	186	Right-handed alpha
Helix 39	AE3	D	187	195	Right-handed alpha
Helix 40	AE4	D	213	223	Right-handed alpha
Helix 41	AE5	D	239	241	Right-handed 310
Helix 42	AE6	D	242	256	Right-handed alpha
Helix 43	AE7	D	267	272	Right-handed alpha
Helix 44	AE8	D	279	299	Right-handed alpha
Helix 45	AE9	D	337	350	Right-handed alpha
Helix 46	AF1	D	361	370	Right-handed alpha
Helix 47	AF2	D	374	386	Right-handed alpha
Helix 48	AF3	D	395	406	Right-handed alpha
Helix 49	AF4	E	179	191	Right-handed alpha
Helix 50	AF5	E	210	225	Right-handed alpha
Helix 51	AF6	E	248	265	Right-handed alpha
Helix 52	AF7	E	305	317	Right-handed alpha
Helix 53	AF8	E	328	335	Right-handed alpha
Helix 54	AF9	E	339	356	Right-handed alpha
Helix 55	AG1	E	363	381	Right-handed alpha
Helix 56	AG2	F	192	204	Right-handed alpha
Helix 57	AG3	F	232	242	Right-handed alpha
Helix 58	AG4	F	262	278	Right-handed alpha
Helix 59	AG5	F	302	317	Right-handed alpha
Helix 60	AG6	F	358	369	Right-handed alpha
Helix 61	AG7	F	381	388	Right-handed alpha
Helix 62	AG8	F	392	411	Right-handed alpha
Helix 63	AG9	F	417	428	Right-handed alpha
Helix 64	AH1	C	154	166	Right-handed alpha
Helix 65	AH2	C	166	171	Right-handed alpha
Helix 66	AH3	C	197	207	Right-handed alpha
Helix 67	AH4	C	232	241	Right-handed alpha
Helix 68	AH5	C	261	283	Right-handed alpha
Helix 69	AH6	C	298	307	Right-handed alpha
Helix 70	AH7	C	322	332	Right-handed alpha
Helix 71	AH8	C	343	350	Right-handed alpha
Helix 72	AH9	C	356	374	Right-handed alpha
Helix 73	AI1	C	379	392	Right-handed alpha
Helix 74	AI2	f	71	87	Right-handed alpha
Helix 75	AI3	f	93	98	Right-handed alpha
Helix 76	AI4	f	119	126	Right-handed alpha
Helix 77	AI5	f	126	145	Right-handed alpha
Helix 78	AI6	f	164	181	Right-handed alpha
Helix 79	AI7	f	185	190	Right-handed alpha
Helix 80	AI8	f	208	217	Right-handed alpha
Helix 81	AI9	f	221	239	Right-handed alpha
Helix 82	AJ1	f	241	258	Right-handed alpha
Helix 83	AJ2	f	261	273	Right-handed alpha
Helix 84	AJ3	f	274	288	Right-handed alpha
Helix 85	AJ4	f	298	309	Right-handed alpha
Helix 86	AJ5	f	310	324	Right-handed alpha
Helix 87	AJ6	f	328	334	Right-handed alpha
Helix 88	AJ7	f	342	351	Right-handed alpha
Helix 89	AJ8	f	355	360	Right-handed alpha
Helix 90	AJ9	f	369	381	Right-handed alpha
Helix 91	AK1	f	390	394	Right-handed 310
Helix 92	AK2	f	403	417	Right-handed alpha
Helix 93	AK3	f	421	430	Right-handed alpha
Helix 94	AK4	f	437	452	Right-handed alpha
Helix 95	AK5	f	458	464	Right-handed alpha
Helix 96	AK6	f	472	474	Right-handed 310
Helix 97	AK7	f	475	489	Right-handed alpha
Helix 98	AK8	f	495	501	Right-handed alpha
Helix 99	AK9	f	501	508	Right-handed alpha
Helix 100	AL1	f	512	527	Right-handed alpha
Helix 101	AL2	f	535	544	Right-handed alpha
Helix 102	AL3	f	553	566	Right-handed alpha
Helix 103	AL4	f	573	582	Right-handed alpha
Helix 104	AL5	f	585	599	Right-handed alpha
Helix 105	AL6	f	606	616	Right-handed alpha
Helix 106	AL7	f	622	630	Right-handed alpha
Helix 107	AL8	f	630	635	Right-handed alpha
Helix 108	AL9	f	644	649	Right-handed 310
Helix 109	AM1	f	651	663	Right-handed alpha
Helix 110	AM2	f	668	679	Right-handed alpha
Helix 111	AM3	f	683	697	Right-handed alpha
Helix 112	AM4	f	716	728	Right-handed alpha
Helix 113	AM5	f	740	754	Right-handed alpha
Helix 114	AM6	f	774	777	Right-handed 310
Helix 115	AM7	f	778	785	Right-handed alpha
Helix 116	AM8	f	793	798	Right-handed alpha

There are 8 sheets in PDB entry 5VHJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	214	first strand
Strand 2	A	317	320	parallel
Strand 3	A	272	275	parallel
Strand 4	A	238	241	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	223	first strand
Strand 2	B	349	350	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	251	first strand
Strand 2	B	280	285	parallel
Strand 3	B	327	328	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	230	first strand
Strand 2	D	261	265	parallel
Strand 3	D	306	310	parallel
Strand 4	D	202	204	parallel
Strand 5	D	329	331	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	195	197	first strand
Strand 2	E	229	232	parallel
Strand 3	E	274	279	parallel
Strand 4	E	170	173	parallel
Strand 5	E	297	300	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	222	225	first strand
Strand 2	F	348	352	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	248	250	first strand
Strand 2	F	282	286	parallel
Strand 3	F	329	331	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	247	first strand
Strand 2	C	291	294	parallel
Strand 3	C	185	188	parallel
Strand 4	C	313	314	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VHJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VHJ