Analysis of interatomic Contacts of Structural Units in PDB entry:
5VHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VHM entry

There are 6 chains in PDB entry 5VHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
G
 CYS 4LYS 213
A
 PRO 159SER 424
B
 LEU 190LYS 430
D
 ASP 171VAL 406
E
 LYS 168LYS 383
F
 LEU 191ARG 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are123 helices in PDB entry 5VHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
G
8 17Right-handed alpha
Helix 2
AA2
G
18 29Right-handed alpha
Helix 3
AA3
G
30 35Right-handed alpha
Helix 4
AA4
G
42 51Right-handed alpha
Helix 5
AA5
G
52 63Right-handed alpha
Helix 6
AA6
G
75 82Right-handed alpha
Helix 7
AA7
G
85 96Right-handed alpha
Helix 8
AA8
G
108 116Right-handed alpha
Helix 9
AA9
G
118 129Right-handed alpha
Helix 10
AB1
G
142 149Right-handed alpha
Helix 11
AB2
G
151 161Right-handed alpha
Helix 12
AB3
G
174 180Right-handed alpha
Helix 13
AB4
G
184 195Right-handed alpha
Helix 14
AB5
G
207 212Right-handed alpha
Helix 15
AB6
A
160 166Right-handed alpha
Helix 16
AB7
A
182 187Right-handed alpha
Helix 17
AB8
A
192 197Right-handed alpha
Helix 18
AB9
A
197 203Right-handed alpha
Helix 19
AC1
A
222 231Right-handed alpha
Helix 20
AC2
A
241 245Right-handed 310
Helix 21
AC3
A
251 267Right-handed alpha
Helix 22
AC4
A
277 280Right-handed 310
Helix 23
AC5
A
292 307Right-handed alpha
Helix 24
AC6
A
326 337Right-handed alpha
Helix 25
AC7
A
350 358Right-handed alpha
Helix 26
AC8
A
359 361Right-handed 310
Helix 27
AC9
A
369 376Right-handed alpha
Helix 28
AD1
A
381 399Right-handed alpha
Helix 29
AD2
A
405 419Right-handed alpha
Helix 30
AD3
B
191 202Right-handed alpha
Helix 31
AD4
B
207 211Right-handed 310
Helix 32
AD5
B
231 239Right-handed alpha
Helix 33
AD6
B
240 242Right-handed 310
Helix 34
AD7
B
264 277Right-handed alpha
Helix 35
AD8
B
302 317Right-handed alpha
Helix 36
AD9
B
338 342Right-handed 310
Helix 37
AE1
B
358 369Right-handed alpha
Helix 38
AE2
B
380 387Right-handed alpha
Helix 39
AE3
B
391 409Right-handed alpha
Helix 40
AE4
B
415 430Right-handed alpha
Helix 41
AE5
D
172 182Right-handed alpha
Helix 42
AE6
D
182 187Right-handed alpha
Helix 43
AE7
D
213 223Right-handed alpha
Helix 44
AE8
D
241 258Right-handed alpha
Helix 45
AE9
D
268 272Right-handed 310
Helix 46
AF1
D
280 298Right-handed alpha
Helix 47
AF2
D
339 350Right-handed alpha
Helix 48
AF3
D
360 370Right-handed alpha
Helix 49
AF4
D
374 387Right-handed alpha
Helix 50
AF5
D
396 406Right-handed alpha
Helix 51
AF6
E
179 191Right-handed alpha
Helix 52
AF7
E
199 203Right-handed 310
Helix 53
AF8
E
210 225Right-handed alpha
Helix 54
AF9
E
250 263Right-handed alpha
Helix 55
AG1
E
305 316Right-handed alpha
Helix 56
AG2
E
327 334Right-handed alpha
Helix 57
AG3
E
339 355Right-handed alpha
Helix 58
AG4
E
356 358Right-handed 310
Helix 59
AG5
E
364 381Right-handed alpha
Helix 60
AG6
F
192 204Right-handed alpha
Helix 61
AG7
F
232 245Right-handed alpha
Helix 62
AG8
F
263 277Right-handed alpha
Helix 63
AG9
F
302 317Right-handed alpha
Helix 64
AH1
F
358 369Right-handed alpha
Helix 65
AH2
F
381 388Right-handed alpha
Helix 66
AH3
F
392 406Right-handed alpha
Helix 67
AH4
F
417 428Right-handed alpha
Helix 68
AH5
C
157 166Right-handed alpha
Helix 69
AH6
C
195 207Right-handed alpha
Helix 70
AH7
C
219 224Right-handed alpha
Helix 71
AH8
C
233 241Right-handed alpha
Helix 72
AH9
C
260 283Right-handed alpha
Helix 73
AI1
C
297 307Right-handed alpha
Helix 74
AI2
C
322 332Right-handed alpha
Helix 75
AI3
C
345 350Right-handed alpha
Helix 76
AI4
C
356 373Right-handed alpha
Helix 77
AI5
C
379 394Right-handed alpha
Helix 78
AI6
f
11 16Right-handed 310
Helix 79
AI7
f
19 33Right-handed alpha
Helix 80
AI8
f
34 37Right-handed 310
Helix 81
AI9
f
44 49Right-handed alpha
Helix 82
AJ1
f
50 53Right-handed 310
Helix 83
AJ2
f
71 87Right-handed alpha
Helix 84
AJ3
f
93 98Right-handed alpha
Helix 85
AJ4
f
119 126Right-handed alpha
Helix 86
AJ5
f
126 145Right-handed alpha
Helix 87
AJ6
f
164 181Right-handed alpha
Helix 88
AJ7
f
184 191Right-handed alpha
Helix 89
AJ8
f
208 217Right-handed alpha
Helix 90
AJ9
f
221 239Right-handed alpha
Helix 91
AK1
f
241 259Right-handed alpha
Helix 92
AK2
f
262 273Right-handed alpha
Helix 93
AK3
f
275 288Right-handed alpha
Helix 94
AK4
f
298 309Right-handed alpha
Helix 95
AK5
f
310 324Right-handed alpha
Helix 96
AK6
f
328 334Right-handed alpha
Helix 97
AK7
f
342 351Right-handed alpha
Helix 98
AK8
f
355 360Right-handed alpha
Helix 99
AK9
f
371 380Right-handed alpha
Helix 100
AL1
f
404 417Right-handed alpha
Helix 101
AL2
f
421 430Right-handed alpha
Helix 102
AL3
f
437 452Right-handed alpha
Helix 103
AL4
f
458 466Right-handed alpha
Helix 104
AL5
f
472 474Right-handed 310
Helix 105
AL6
f
475 489Right-handed alpha
Helix 106
AL7
f
496 508Right-handed alpha
Helix 107
AL8
f
511 527Right-handed alpha
Helix 108
AL9
f
535 548Right-handed alpha
Helix 109
AM1
f
553 567Right-handed alpha
Helix 110
AM2
f
573 582Right-handed alpha
Helix 111
AM3
f
588 599Right-handed alpha
Helix 112
AM4
f
606 616Right-handed alpha
Helix 113
AM5
f
622 630Right-handed alpha
Helix 114
AM6
f
630 635Right-handed alpha
Helix 115
AM7
f
653 663Right-handed alpha
Helix 116
AM8
f
668 680Right-handed alpha
Helix 117
AM9
f
683 697Right-handed alpha
Helix 118
AN1
f
717 728Right-handed alpha
Helix 119
AN2
f
740 754Right-handed alpha
Helix 120
AN3
f
774 777Right-handed 310
Helix 121
AN4
f
778 783Right-handed alpha
Helix 122
AN5
f
784 787Right-handed 310
Helix 123
AN6
f
790 798Right-handed alpha
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There are 6 sheets in PDB entry 5VHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 275first strand
Strand 2
A
318 320parallel
Strand 3
A
212 214parallel
Strand 4
A
340 341parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 225first strand
Strand 2
B
327 331parallel
Strand 3
B
281 285parallel
Strand 4
B
247 251parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
263 264first strand
Strand 2
D
308 310parallel
Strand 3
D
202 204parallel
Strand 4
D
329 331parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
229 232first strand
Strand 2
E
274 279parallel
Strand 3
E
170 173parallel
Strand 4
E
297 300parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
248 250first strand
Strand 2
F
282 286parallel
Strand 3
F
328 331parallel
Strand 4
F
222 225parallel
Strand 5
F
348 352parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
185 188first strand
Strand 2
C
291 294parallel
Strand 3
C
244 247parallel
Strand 4
C
210 213parallel
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