Analysis of interatomic Contacts of Structural Units in PDB entry:
5VHN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VHN entry

There are 6 chains in PDB entry 5VHN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	LEU 8	GLY 226
A	PRO 159	SER 424
B	ASP 168	GLU 432
D	MET 170	VAL 406
E	VAL 115	LYS 383
F	TYR 168	THR 234

There are132 helices in PDB entry 5VHN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	8	17	Right-handed alpha
Helix 2	AA2	G	18	29	Right-handed alpha
Helix 3	AA3	G	30	35	Right-handed alpha
Helix 4	AA4	G	42	50	Right-handed alpha
Helix 5	AA5	G	52	63	Right-handed alpha
Helix 6	AA6	G	75	84	Right-handed alpha
Helix 7	AA7	G	85	96	Right-handed alpha
Helix 8	AA8	G	108	116	Right-handed alpha
Helix 9	AA9	G	118	129	Right-handed alpha
Helix 10	AB1	G	141	150	Right-handed alpha
Helix 11	AB2	G	151	160	Right-handed alpha
Helix 12	AB3	G	174	182	Right-handed alpha
Helix 13	AB4	G	184	194	Right-handed alpha
Helix 14	AB5	G	207	212	Right-handed alpha
Helix 15	AB6	G	215	226	Right-handed alpha
Helix 16	AB7	A	160	165	Right-handed alpha
Helix 17	AB8	A	173	177	Right-handed 310
Helix 18	AB9	A	182	192	Right-handed alpha
Helix 19	AC1	A	192	197	Right-handed alpha
Helix 20	AC2	A	197	204	Right-handed alpha
Helix 21	AC3	A	222	232	Right-handed alpha
Helix 22	AC4	A	251	267	Right-handed alpha
Helix 23	AC5	A	276	280	Right-handed 310
Helix 24	AC6	A	292	307	Right-handed alpha
Helix 25	AC7	A	326	333	Right-handed alpha
Helix 26	AC8	A	334	336	Right-handed 310
Helix 27	AC9	A	347	358	Right-handed alpha
Helix 28	AD1	A	359	361	Right-handed 310
Helix 29	AD2	A	369	376	Right-handed alpha
Helix 30	AD3	A	381	398	Right-handed alpha
Helix 31	AD4	A	405	424	Right-handed alpha
Helix 32	AD5	B	169	173	Right-handed alpha
Helix 33	AD6	B	190	202	Right-handed alpha
Helix 34	AD7	B	207	211	Right-handed 310
Helix 35	AD8	B	231	239	Right-handed alpha
Helix 36	AD9	B	240	243	Right-handed 310
Helix 37	AE1	B	253	258	Right-handed alpha
Helix 38	AE2	B	264	276	Right-handed alpha
Helix 39	AE3	B	302	317	Right-handed alpha
Helix 40	AE4	B	338	342	Right-handed 310
Helix 41	AE5	B	358	369	Right-handed alpha
Helix 42	AE6	B	382	387	Right-handed alpha
Helix 43	AE7	B	391	408	Right-handed alpha
Helix 44	AE8	B	415	430	Right-handed alpha
Helix 45	AE9	D	171	186	Right-handed alpha
Helix 46	AF1	D	213	223	Right-handed alpha
Helix 47	AF2	D	233	236	Right-handed 310
Helix 48	AF3	D	241	258	Right-handed alpha
Helix 49	AF4	D	279	299	Right-handed alpha
Helix 50	AF5	D	337	350	Right-handed alpha
Helix 51	AF6	D	361	370	Right-handed alpha
Helix 52	AF7	D	374	386	Right-handed alpha
Helix 53	AF8	D	395	406	Right-handed alpha
Helix 54	AF9	E	116	122	Right-handed alpha
Helix 55	AG1	E	130	134	Right-handed 310
Helix 56	AG2	E	179	191	Right-handed alpha
Helix 57	AG3	E	211	225	Right-handed alpha
Helix 58	AG4	E	247	265	Right-handed alpha
Helix 59	AG5	E	305	317	Right-handed alpha
Helix 60	AG6	E	328	335	Right-handed alpha
Helix 61	AG7	E	339	355	Right-handed alpha
Helix 62	AG8	E	356	358	Right-handed 310
Helix 63	AG9	E	364	381	Right-handed alpha
Helix 64	AH1	F	169	174	Right-handed alpha
Helix 65	AH2	F	184	188	Right-handed 310
Helix 66	AH3	F	191	208	Right-handed alpha
Helix 67	AH4	F	210	216	Right-handed alpha
Helix 68	AH5	F	232	245	Right-handed alpha
Helix 69	AH6	F	254	256	Right-handed 310
Helix 70	AH7	F	262	278	Right-handed alpha
Helix 71	AH8	F	301	317	Right-handed alpha
Helix 72	AH9	F	358	370	Right-handed alpha
Helix 73	AI1	F	381	388	Right-handed alpha
Helix 74	AI2	F	392	410	Right-handed alpha
Helix 75	AI3	F	418	428	Right-handed alpha
Helix 76	AI4	C	155	162	Right-handed alpha
Helix 77	AI5	C	166	171	Right-handed alpha
Helix 78	AI6	C	197	208	Right-handed alpha
Helix 79	AI7	C	232	241	Right-handed alpha
Helix 80	AI8	C	260	280	Right-handed alpha
Helix 81	AI9	C	298	307	Right-handed alpha
Helix 82	AJ1	C	322	335	Right-handed alpha
Helix 83	AJ2	C	343	350	Right-handed alpha
Helix 84	AJ3	C	356	365	Right-handed alpha
Helix 85	AJ4	C	366	374	Right-handed alpha
Helix 86	AJ5	C	379	394	Right-handed alpha
Helix 87	AJ6	f	11	15	Right-handed 310
Helix 88	AJ7	f	19	33	Right-handed alpha
Helix 89	AJ8	f	44	49	Right-handed alpha
Helix 90	AJ9	f	71	84	Right-handed alpha
Helix 91	AK1	f	93	98	Right-handed alpha
Helix 92	AK2	f	119	144	Right-handed alpha
Helix 93	AK3	f	164	181	Right-handed alpha
Helix 94	AK4	f	185	190	Right-handed alpha
Helix 95	AK5	f	208	217	Right-handed alpha
Helix 96	AK6	f	221	239	Right-handed alpha
Helix 97	AK7	f	241	259	Right-handed alpha
Helix 98	AK8	f	261	273	Right-handed alpha
Helix 99	AK9	f	274	288	Right-handed alpha
Helix 100	AL1	f	298	309	Right-handed alpha
Helix 101	AL2	f	310	325	Right-handed alpha
Helix 102	AL3	f	328	334	Right-handed alpha
Helix 103	AL4	f	336	341	Right-handed alpha
Helix 104	AL5	f	342	351	Right-handed alpha
Helix 105	AL6	f	355	360	Right-handed alpha
Helix 106	AL7	f	369	379	Right-handed alpha
Helix 107	AL8	f	380	382	Right-handed 310
Helix 108	AL9	f	403	417	Right-handed alpha
Helix 109	AM1	f	421	430	Right-handed alpha
Helix 110	AM2	f	437	451	Right-handed alpha
Helix 111	AM3	f	459	464	Right-handed alpha
Helix 112	AM4	f	475	489	Right-handed alpha
Helix 113	AM5	f	494	506	Right-handed alpha
Helix 114	AM6	f	511	526	Right-handed alpha
Helix 115	AM7	f	535	544	Right-handed alpha
Helix 116	AM8	f	552	567	Right-handed alpha
Helix 117	AM9	f	573	582	Right-handed alpha
Helix 118	AN1	f	585	599	Right-handed alpha
Helix 119	AN2	f	606	615	Right-handed alpha
Helix 120	AN3	f	616	618	Right-handed 310
Helix 121	AN4	f	622	628	Right-handed alpha
Helix 122	AN5	f	630	635	Right-handed alpha
Helix 123	AN6	f	645	649	Right-handed 310
Helix 124	AN7	f	651	662	Right-handed alpha
Helix 125	AN8	f	668	679	Right-handed alpha
Helix 126	AN9	f	683	697	Right-handed alpha
Helix 127	AO1	f	717	728	Right-handed alpha
Helix 128	AO2	f	740	754	Right-handed alpha
Helix 129	AO3	f	774	777	Right-handed 310
Helix 130	AO4	f	778	784	Right-handed alpha
Helix 131	AO5	f	785	787	Right-handed 310
Helix 132	AO6	f	793	798	Right-handed alpha

There are 9 sheets in PDB entry 5VHN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	215	first strand
Strand 2	A	340	342	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	272	274	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	225	first strand
Strand 2	B	326	331	parallel
Strand 3	B	281	285	parallel
Strand 4	B	248	251	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	374	first strand
Strand 2	B	413	414	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	231	first strand
Strand 2	D	260	265	parallel
Strand 3	D	305	310	parallel
Strand 4	D	201	204	parallel
Strand 5	D	329	330	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	197	199	first strand
Strand 2	E	229	233	parallel
Strand 3	E	274	279	parallel
Strand 4	E	169	173	parallel
Strand 5	E	295	299	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	328	332	first strand
Strand 2	F	222	226	parallel
Strand 3	F	348	351	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	252	first strand
Strand 2	F	281	286	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	293	first strand
Strand 2	C	185	187	parallel
Strand 3	C	313	314	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VHN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VHN