Analysis of interatomic Contacts of Structural Units in PDB entry:
5VHO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VHO entry

There are 6 chains in PDB entry 5VHO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	CYS 4	LYS 213
A	ASP 158	SER 424
B	GLU 182	GLY 433
D	ASP 171	VAL 406
E	LYS 168	LYS 383
F	LEU 191	GLU 359

There are125 helices in PDB entry 5VHO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	8	16	Right-handed alpha
Helix 2	AA2	G	42	51	Right-handed alpha
Helix 3	AA3	G	52	63	Right-handed alpha
Helix 4	AA4	G	75	83	Right-handed alpha
Helix 5	AA5	G	85	96	Right-handed alpha
Helix 6	AA6	G	108	114	Right-handed alpha
Helix 7	AA7	G	118	128	Right-handed alpha
Helix 8	AA8	G	142	150	Right-handed alpha
Helix 9	AA9	G	151	160	Right-handed alpha
Helix 10	AB1	G	174	182	Right-handed alpha
Helix 11	AB2	G	184	193	Right-handed alpha
Helix 12	AB3	G	207	212	Right-handed alpha
Helix 13	AB4	A	159	166	Right-handed alpha
Helix 14	AB5	A	173	177	Right-handed 310
Helix 15	AB6	A	180	189	Right-handed alpha
Helix 16	AB7	A	192	197	Right-handed alpha
Helix 17	AB8	A	197	203	Right-handed alpha
Helix 18	AB9	A	223	231	Right-handed alpha
Helix 19	AC1	A	243	245	Right-handed 310
Helix 20	AC2	A	251	267	Right-handed alpha
Helix 21	AC3	A	293	307	Right-handed alpha
Helix 22	AC4	A	328	333	Right-handed alpha
Helix 23	AC5	A	350	359	Right-handed alpha
Helix 24	AC6	A	369	375	Right-handed alpha
Helix 25	AC7	A	381	399	Right-handed alpha
Helix 26	AC8	A	405	422	Right-handed alpha
Helix 27	AC9	B	190	202	Right-handed alpha
Helix 28	AD1	B	207	211	Right-handed 310
Helix 29	AD2	B	231	239	Right-handed alpha
Helix 30	AD3	B	253	258	Right-handed alpha
Helix 31	AD4	B	264	276	Right-handed alpha
Helix 32	AD5	B	302	317	Right-handed alpha
Helix 33	AD6	B	333	337	Right-handed 310
Helix 34	AD7	B	338	342	Right-handed 310
Helix 35	AD8	B	358	372	Right-handed alpha
Helix 36	AD9	B	380	385	Right-handed alpha
Helix 37	AE1	B	392	409	Right-handed alpha
Helix 38	AE2	B	417	433	Right-handed alpha
Helix 39	AE3	D	172	183	Right-handed alpha
Helix 40	AE4	D	189	194	Right-handed alpha
Helix 41	AE5	D	213	223	Right-handed alpha
Helix 42	AE6	D	241	257	Right-handed alpha
Helix 43	AE7	D	337	350	Right-handed alpha
Helix 44	AE8	D	361	370	Right-handed alpha
Helix 45	AE9	D	374	387	Right-handed alpha
Helix 46	AF1	D	395	406	Right-handed alpha
Helix 47	AF2	E	179	191	Right-handed alpha
Helix 48	AF3	E	199	203	Right-handed 310
Helix 49	AF4	E	210	225	Right-handed alpha
Helix 50	AF5	E	250	265	Right-handed alpha
Helix 51	AF6	E	286	291	Right-handed alpha
Helix 52	AF7	E	305	317	Right-handed alpha
Helix 53	AF8	E	327	335	Right-handed alpha
Helix 54	AF9	E	339	355	Right-handed alpha
Helix 55	AG1	E	363	381	Right-handed alpha
Helix 56	AG2	F	195	208	Right-handed alpha
Helix 57	AG3	F	208	216	Right-handed alpha
Helix 58	AG4	F	232	242	Right-handed alpha
Helix 59	AG5	F	252	257	Right-handed alpha
Helix 60	AG6	F	262	275	Right-handed alpha
Helix 61	AG7	F	302	319	Right-handed alpha
Helix 62	AG8	F	358	370	Right-handed alpha
Helix 63	AG9	F	381	388	Right-handed alpha
Helix 64	AH1	F	392	407	Right-handed alpha
Helix 65	AH2	F	417	428	Right-handed alpha
Helix 66	AH3	C	147	151	Right-handed 310
Helix 67	AH4	C	154	165	Right-handed alpha
Helix 68	AH5	C	166	171	Right-handed alpha
Helix 69	AH6	C	173	178	Right-handed alpha
Helix 70	AH7	C	197	207	Right-handed alpha
Helix 71	AH8	C	231	241	Right-handed alpha
Helix 72	AH9	C	259	283	Right-handed alpha
Helix 73	AI1	C	298	304	Right-handed alpha
Helix 74	AI2	C	325	332	Right-handed alpha
Helix 75	AI3	C	344	350	Right-handed alpha
Helix 76	AI4	C	357	373	Right-handed alpha
Helix 77	AI5	C	379	392	Right-handed alpha
Helix 78	AI6	f	12	16	Right-handed 310
Helix 79	AI7	f	19	33	Right-handed alpha
Helix 80	AI8	f	34	36	Right-handed 310
Helix 81	AI9	f	44	49	Right-handed alpha
Helix 82	AJ1	f	50	53	Right-handed 310
Helix 83	AJ2	f	71	87	Right-handed alpha
Helix 84	AJ3	f	93	98	Right-handed alpha
Helix 85	AJ4	f	119	145	Right-handed alpha
Helix 86	AJ5	f	164	181	Right-handed alpha
Helix 87	AJ6	f	184	190	Right-handed alpha
Helix 88	AJ7	f	208	217	Right-handed alpha
Helix 89	AJ8	f	221	239	Right-handed alpha
Helix 90	AJ9	f	241	259	Right-handed alpha
Helix 91	AK1	f	261	273	Right-handed alpha
Helix 92	AK2	f	275	288	Right-handed alpha
Helix 93	AK3	f	298	309	Right-handed alpha
Helix 94	AK4	f	310	324	Right-handed alpha
Helix 95	AK5	f	328	335	Right-handed alpha
Helix 96	AK6	f	342	351	Right-handed alpha
Helix 97	AK7	f	355	361	Right-handed alpha
Helix 98	AK8	f	369	380	Right-handed alpha
Helix 99	AK9	f	390	394	Right-handed 310
Helix 100	AL1	f	403	417	Right-handed alpha
Helix 101	AL2	f	421	430	Right-handed alpha
Helix 102	AL3	f	437	452	Right-handed alpha
Helix 103	AL4	f	458	464	Right-handed alpha
Helix 104	AL5	f	472	474	Right-handed 310
Helix 105	AL6	f	475	489	Right-handed alpha
Helix 106	AL7	f	494	508	Right-handed alpha
Helix 107	AL8	f	511	527	Right-handed alpha
Helix 108	AL9	f	535	544	Right-handed alpha
Helix 109	AM1	f	553	566	Right-handed alpha
Helix 110	AM2	f	573	582	Right-handed alpha
Helix 111	AM3	f	585	599	Right-handed alpha
Helix 112	AM4	f	606	616	Right-handed alpha
Helix 113	AM5	f	622	630	Right-handed alpha
Helix 114	AM6	f	630	635	Right-handed alpha
Helix 115	AM7	f	645	649	Right-handed 310
Helix 116	AM8	f	653	663	Right-handed alpha
Helix 117	AM9	f	668	679	Right-handed alpha
Helix 118	AN1	f	683	697	Right-handed alpha
Helix 119	AN2	f	716	728	Right-handed alpha
Helix 120	AN3	f	740	753	Right-handed alpha
Helix 121	AN4	f	774	777	Right-handed 310
Helix 122	AN5	f	778	784	Right-handed alpha
Helix 123	AN6	f	785	787	Right-handed 310
Helix 124	AN7	f	790	792	Right-handed 310
Helix 125	AN8	f	793	798	Right-handed alpha

There are 9 sheets in PDB entry 5VHO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	320	first strand
Strand 2	A	213	215	parallel
Strand 3	A	340	342	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	272	275	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	284	first strand
Strand 2	B	326	331	parallel
Strand 3	B	222	225	parallel
Strand 4	B	349	350	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	227	first strand
Strand 2	D	260	265	parallel
Strand 3	D	307	310	parallel
Strand 4	D	201	205	parallel
Strand 5	D	329	332	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	230	232	first strand
Strand 2	E	275	277	parallel
Strand 3	E	170	173	parallel
Strand 4	E	297	300	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	222	226	first strand
Strand 2	F	348	353	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	248	first strand
Strand 2	F	281	282	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	189	first strand
Strand 2	C	314	316	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	247	first strand
Strand 2	C	289	292	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VHO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VHO