Analysis of interatomic Contacts of Structural Units in PDB entry:
5VHP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VHP entry

There are 6 chains in PDB entry 5VHP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	GLY 3	GLY 226
A	PRO 159	SER 424
B	GLY 188	LYS 430
D	MET 170	VAL 406
E	LYS 168	LYS 383
F	LEU 191	GLN 316

There are122 helices in PDB entry 5VHP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	8	17	Right-handed alpha
Helix 2	AA2	G	18	29	Right-handed alpha
Helix 3	AA3	G	30	35	Right-handed 310
Helix 4	AA4	G	42	51	Right-handed alpha
Helix 5	AA5	G	52	63	Right-handed alpha
Helix 6	AA6	G	75	84	Right-handed alpha
Helix 7	AA7	G	85	96	Right-handed alpha
Helix 8	AA8	G	108	116	Right-handed alpha
Helix 9	AA9	G	118	128	Right-handed alpha
Helix 10	AB1	G	141	149	Right-handed alpha
Helix 11	AB2	G	151	161	Right-handed alpha
Helix 12	AB3	G	174	182	Right-handed alpha
Helix 13	AB4	G	184	194	Right-handed alpha
Helix 14	AB5	G	207	212	Right-handed alpha
Helix 15	AB6	G	215	226	Right-handed alpha
Helix 16	AB7	A	160	164	Right-handed alpha
Helix 17	AB8	A	173	177	Right-handed 310
Helix 18	AB9	A	182	187	Right-handed alpha
Helix 19	AC1	A	192	197	Right-handed alpha
Helix 20	AC2	A	197	205	Right-handed alpha
Helix 21	AC3	A	222	231	Right-handed alpha
Helix 22	AC4	A	251	267	Right-handed alpha
Helix 23	AC5	A	277	280	Right-handed 310
Helix 24	AC6	A	292	308	Right-handed alpha
Helix 25	AC7	A	326	333	Right-handed alpha
Helix 26	AC8	A	350	358	Right-handed alpha
Helix 27	AC9	A	359	361	Right-handed 310
Helix 28	AD1	A	369	375	Right-handed alpha
Helix 29	AD2	A	381	398	Right-handed alpha
Helix 30	AD3	A	409	422	Right-handed alpha
Helix 31	AD4	B	190	202	Right-handed alpha
Helix 32	AD5	B	207	215	Right-handed alpha
Helix 33	AD6	B	231	238	Right-handed alpha
Helix 34	AD7	B	239	243	Right-handed 310
Helix 35	AD8	B	253	258	Right-handed alpha
Helix 36	AD9	B	264	276	Right-handed alpha
Helix 37	AE1	B	303	317	Right-handed alpha
Helix 38	AE2	B	333	337	Right-handed 310
Helix 39	AE3	B	338	342	Right-handed 310
Helix 40	AE4	B	359	371	Right-handed alpha
Helix 41	AE5	B	380	387	Right-handed alpha
Helix 42	AE6	B	391	410	Right-handed alpha
Helix 43	AE7	B	415	430	Right-handed alpha
Helix 44	AE8	D	172	182	Right-handed alpha
Helix 45	AE9	D	189	194	Right-handed alpha
Helix 46	AF1	D	213	223	Right-handed alpha
Helix 47	AF2	D	242	255	Right-handed alpha
Helix 48	AF3	D	279	298	Right-handed alpha
Helix 49	AF4	D	337	350	Right-handed alpha
Helix 50	AF5	D	361	370	Right-handed alpha
Helix 51	AF6	D	374	385	Right-handed alpha
Helix 52	AF7	D	395	406	Right-handed alpha
Helix 53	AF8	E	179	191	Right-handed alpha
Helix 54	AF9	E	211	225	Right-handed alpha
Helix 55	AG1	E	250	265	Right-handed alpha
Helix 56	AG2	E	305	317	Right-handed alpha
Helix 57	AG3	E	327	335	Right-handed alpha
Helix 58	AG4	E	339	355	Right-handed alpha
Helix 59	AG5	E	356	358	Right-handed 310
Helix 60	AG6	E	364	381	Right-handed alpha
Helix 61	AG7	F	192	208	Right-handed alpha
Helix 62	AG8	F	208	215	Right-handed alpha
Helix 63	AG9	F	232	244	Right-handed alpha
Helix 64	AH1	F	253	257	Right-handed 310
Helix 65	AH2	F	262	278	Right-handed alpha
Helix 66	AH3	F	302	319	Right-handed alpha
Helix 67	AH4	F	358	370	Right-handed alpha
Helix 68	AH5	F	381	388	Right-handed alpha
Helix 69	AH6	F	392	411	Right-handed alpha
Helix 70	AH7	F	418	428	Right-handed alpha
Helix 71	AH8	C	155	160	Right-handed alpha
Helix 72	AH9	C	173	179	Right-handed alpha
Helix 73	AI1	C	197	207	Right-handed alpha
Helix 74	AI2	C	231	241	Right-handed alpha
Helix 75	AI3	C	261	281	Right-handed alpha
Helix 76	AI4	C	298	307	Right-handed alpha
Helix 77	AI5	C	321	332	Right-handed alpha
Helix 78	AI6	C	344	350	Right-handed alpha
Helix 79	AI7	C	357	365	Right-handed alpha
Helix 80	AI8	C	366	373	Right-handed alpha
Helix 81	AI9	C	379	394	Right-handed alpha
Helix 82	AJ1	f	71	87	Right-handed alpha
Helix 83	AJ2	f	93	98	Right-handed alpha
Helix 84	AJ3	f	119	145	Right-handed alpha
Helix 85	AJ4	f	164	181	Right-handed alpha
Helix 86	AJ5	f	185	190	Right-handed alpha
Helix 87	AJ6	f	208	217	Right-handed alpha
Helix 88	AJ7	f	221	239	Right-handed alpha
Helix 89	AJ8	f	241	259	Right-handed alpha
Helix 90	AJ9	f	261	273	Right-handed alpha
Helix 91	AK1	f	274	288	Right-handed alpha
Helix 92	AK2	f	298	309	Right-handed alpha
Helix 93	AK3	f	310	322	Right-handed alpha
Helix 94	AK4	f	328	334	Right-handed alpha
Helix 95	AK5	f	342	350	Right-handed alpha
Helix 96	AK6	f	355	361	Right-handed alpha
Helix 97	AK7	f	369	380	Right-handed alpha
Helix 98	AK8	f	403	417	Right-handed alpha
Helix 99	AK9	f	421	430	Right-handed alpha
Helix 100	AL1	f	431	433	Right-handed 310
Helix 101	AL2	f	437	452	Right-handed alpha
Helix 102	AL3	f	458	464	Right-handed alpha
Helix 103	AL4	f	465	467	Right-handed 310
Helix 104	AL5	f	472	489	Right-handed alpha
Helix 105	AL6	f	495	501	Right-handed alpha
Helix 106	AL7	f	501	508	Right-handed alpha
Helix 107	AL8	f	511	526	Right-handed alpha
Helix 108	AL9	f	535	544	Right-handed alpha
Helix 109	AM1	f	552	567	Right-handed alpha
Helix 110	AM2	f	573	582	Right-handed alpha
Helix 111	AM3	f	585	599	Right-handed alpha
Helix 112	AM4	f	606	616	Right-handed alpha
Helix 113	AM5	f	622	628	Right-handed alpha
Helix 114	AM6	f	630	635	Right-handed alpha
Helix 115	AM7	f	651	663	Right-handed alpha
Helix 116	AM8	f	668	680	Right-handed alpha
Helix 117	AM9	f	683	697	Right-handed alpha
Helix 118	AN1	f	717	728	Right-handed alpha
Helix 119	AN2	f	740	753	Right-handed alpha
Helix 120	AN3	f	774	779	Right-handed alpha
Helix 121	AN4	f	783	787	Right-handed 310
Helix 122	AN5	f	793	798	Right-handed alpha

There are 8 sheets in PDB entry 5VHP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	272	275	parallel
Strand 3	A	318	320	parallel
Strand 4	A	212	215	parallel
Strand 5	A	340	342	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	225	first strand
Strand 2	B	326	331	parallel
Strand 3	B	280	285	parallel
Strand 4	B	246	251	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	203	first strand
Strand 2	D	329	330	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	231	first strand
Strand 2	D	261	265	parallel
Strand 3	D	306	310	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	197	199	first strand
Strand 2	E	229	233	parallel
Strand 3	E	274	279	parallel
Strand 4	E	170	173	parallel
Strand 5	E	297	300	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	222	224	first strand
Strand 2	F	348	351	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	282	286	first strand
Strand 2	F	327	331	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	244	247	parallel
Strand 3	C	289	295	parallel
Strand 4	C	185	189	parallel
Strand 5	C	313	316	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VHP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VHP