Analysis of interatomic Contacts of Structural Units in PDB entry:
5VHQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VHQ entry

There are 6 chains in PDB entry 5VHQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	ASN 7	GLY 226
A	PRO 159	SER 424
B	GLY 189	GLY 433
D	ASP 171	VAL 406
E	PRO 167	LYS 383
F	LEU 191	MET 310

There are128 helices in PDB entry 5VHQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	8	14	Right-handed alpha
Helix 2	AA2	G	19	29	Right-handed alpha
Helix 3	AA3	G	29	34	Right-handed alpha
Helix 4	AA4	G	42	50	Right-handed alpha
Helix 5	AA5	G	52	63	Right-handed alpha
Helix 6	AA6	G	75	84	Right-handed alpha
Helix 7	AA7	G	85	96	Right-handed alpha
Helix 8	AA8	G	108	116	Right-handed alpha
Helix 9	AA9	G	118	128	Right-handed alpha
Helix 10	AB1	G	141	150	Right-handed alpha
Helix 11	AB2	G	151	161	Right-handed alpha
Helix 12	AB3	G	174	181	Right-handed alpha
Helix 13	AB4	G	184	193	Right-handed alpha
Helix 14	AB5	G	207	212	Right-handed alpha
Helix 15	AB6	G	215	226	Right-handed alpha
Helix 16	AB7	A	160	165	Right-handed alpha
Helix 17	AB8	A	173	177	Right-handed 310
Helix 18	AB9	A	182	192	Right-handed alpha
Helix 19	AC1	A	192	197	Right-handed alpha
Helix 20	AC2	A	197	205	Right-handed alpha
Helix 21	AC3	A	222	231	Right-handed alpha
Helix 22	AC4	A	241	245	Right-handed 310
Helix 23	AC5	A	251	267	Right-handed alpha
Helix 24	AC6	A	277	280	Right-handed 310
Helix 25	AC7	A	292	307	Right-handed alpha
Helix 26	AC8	A	326	337	Right-handed alpha
Helix 27	AC9	A	350	358	Right-handed alpha
Helix 28	AD1	A	359	361	Right-handed 310
Helix 29	AD2	A	369	376	Right-handed alpha
Helix 30	AD3	A	381	399	Right-handed alpha
Helix 31	AD4	A	409	419	Right-handed alpha
Helix 32	AD5	B	190	202	Right-handed alpha
Helix 33	AD6	B	207	211	Right-handed 310
Helix 34	AD7	B	232	241	Right-handed alpha
Helix 35	AD8	B	242	244	Right-handed 310
Helix 36	AD9	B	253	258	Right-handed alpha
Helix 37	AE1	B	264	276	Right-handed alpha
Helix 38	AE2	B	302	317	Right-handed alpha
Helix 39	AE3	B	338	340	Right-handed 310
Helix 40	AE4	B	341	346	Right-handed alpha
Helix 41	AE5	B	356	369	Right-handed alpha
Helix 42	AE6	B	380	387	Right-handed alpha
Helix 43	AE7	B	391	409	Right-handed alpha
Helix 44	AE8	B	415	433	Right-handed alpha
Helix 45	AE9	D	172	183	Right-handed alpha
Helix 46	AF1	D	190	195	Right-handed alpha
Helix 47	AF2	D	213	223	Right-handed alpha
Helix 48	AF3	D	241	257	Right-handed alpha
Helix 49	AF4	D	280	299	Right-handed alpha
Helix 50	AF5	D	337	350	Right-handed alpha
Helix 51	AF6	D	360	370	Right-handed alpha
Helix 52	AF7	D	374	387	Right-handed alpha
Helix 53	AF8	D	395	406	Right-handed alpha
Helix 54	AF9	E	180	191	Right-handed alpha
Helix 55	AG1	E	211	225	Right-handed alpha
Helix 56	AG2	E	249	265	Right-handed alpha
Helix 57	AG3	E	307	317	Right-handed alpha
Helix 58	AG4	E	328	335	Right-handed alpha
Helix 59	AG5	E	339	356	Right-handed alpha
Helix 60	AG6	E	364	381	Right-handed alpha
Helix 61	AG7	F	192	208	Right-handed alpha
Helix 62	AG8	F	208	215	Right-handed alpha
Helix 63	AG9	F	232	245	Right-handed alpha
Helix 64	AH1	F	253	257	Right-handed 310
Helix 65	AH2	F	262	278	Right-handed alpha
Helix 66	AH3	F	305	317	Right-handed alpha
Helix 67	AH4	F	339	343	Right-handed 310
Helix 68	AH5	F	358	369	Right-handed alpha
Helix 69	AH6	F	382	388	Right-handed alpha
Helix 70	AH7	F	392	404	Right-handed alpha
Helix 71	AH8	F	417	428	Right-handed alpha
Helix 72	AH9	C	157	162	Right-handed alpha
Helix 73	AI1	C	173	179	Right-handed alpha
Helix 74	AI2	C	197	206	Right-handed alpha
Helix 75	AI3	C	232	241	Right-handed alpha
Helix 76	AI4	C	261	266	Right-handed alpha
Helix 77	AI5	C	266	281	Right-handed alpha
Helix 78	AI6	C	298	307	Right-handed alpha
Helix 79	AI7	C	322	335	Right-handed alpha
Helix 80	AI8	C	343	350	Right-handed alpha
Helix 81	AI9	C	356	373	Right-handed alpha
Helix 82	AJ1	C	379	391	Right-handed alpha
Helix 83	AJ2	f	11	15	Right-handed 310
Helix 84	AJ3	f	19	34	Right-handed alpha
Helix 85	AJ4	f	44	49	Right-handed alpha
Helix 86	AJ5	f	50	53	Right-handed 310
Helix 87	AJ6	f	71	84	Right-handed alpha
Helix 88	AJ7	f	93	98	Right-handed alpha
Helix 89	AJ8	f	119	127	Right-handed alpha
Helix 90	AJ9	f	128	143	Right-handed alpha
Helix 91	AK1	f	164	181	Right-handed alpha
Helix 92	AK2	f	185	190	Right-handed alpha
Helix 93	AK3	f	208	217	Right-handed alpha
Helix 94	AK4	f	220	239	Right-handed alpha
Helix 95	AK5	f	241	259	Right-handed alpha
Helix 96	AK6	f	261	273	Right-handed alpha
Helix 97	AK7	f	274	288	Right-handed alpha
Helix 98	AK8	f	298	309	Right-handed alpha
Helix 99	AK9	f	310	321	Right-handed alpha
Helix 100	AL1	f	328	334	Right-handed alpha
Helix 101	AL2	f	343	351	Right-handed alpha
Helix 102	AL3	f	355	361	Right-handed alpha
Helix 103	AL4	f	369	380	Right-handed alpha
Helix 104	AL5	f	404	412	Right-handed alpha
Helix 105	AL6	f	412	417	Right-handed alpha
Helix 106	AL7	f	421	430	Right-handed alpha
Helix 107	AL8	f	437	452	Right-handed alpha
Helix 108	AL9	f	458	465	Right-handed alpha
Helix 109	AM1	f	475	488	Right-handed alpha
Helix 110	AM2	f	495	506	Right-handed alpha
Helix 111	AM3	f	511	526	Right-handed alpha
Helix 112	AM4	f	535	548	Right-handed alpha
Helix 113	AM5	f	553	566	Right-handed alpha
Helix 114	AM6	f	573	582	Right-handed alpha
Helix 115	AM7	f	585	598	Right-handed alpha
Helix 116	AM8	f	606	615	Right-handed alpha
Helix 117	AM9	f	616	618	Right-handed 310
Helix 118	AN1	f	622	628	Right-handed alpha
Helix 119	AN2	f	630	635	Right-handed alpha
Helix 120	AN3	f	645	649	Right-handed 310
Helix 121	AN4	f	651	663	Right-handed alpha
Helix 122	AN5	f	668	678	Right-handed alpha
Helix 123	AN6	f	683	697	Right-handed alpha
Helix 124	AN7	f	717	728	Right-handed alpha
Helix 125	AN8	f	740	753	Right-handed alpha
Helix 126	AN9	f	780	785	Right-handed alpha
Helix 127	AO1	f	790	792	Right-handed 310
Helix 128	AO2	f	793	798	Right-handed alpha

There are 7 sheets in PDB entry 5VHQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	272	275	parallel
Strand 3	A	319	320	parallel
Strand 4	A	213	215	parallel
Strand 5	A	340	342	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	251	first strand
Strand 2	B	281	285	parallel
Strand 3	B	326	331	parallel
Strand 4	B	222	225	parallel
Strand 5	B	349	351	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	230	first strand
Strand 2	D	261	264	parallel
Strand 3	D	306	308	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	228	232	first strand
Strand 2	E	273	279	parallel
Strand 3	E	170	173	parallel
Strand 4	E	297	300	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	222	225	first strand
Strand 2	F	348	352	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	282	284	first strand
Strand 2	F	327	329	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	244	247	parallel
Strand 3	C	289	293	parallel
Strand 4	C	185	187	parallel
Strand 5	C	313	314	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VHQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VHQ