Analysis of interatomic Contacts of Structural Units in PDB entry:
5VHR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VHR entry

There are 6 chains in PDB entry 5VHR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	LEU 8	LYS 213
A	PRO 159	LYS 422
B	GLY 189	GLY 433
D	ASP 171	VAL 406
E	PRO 167	LYS 383
F	TYR 168	ASP 318

There are124 helices in PDB entry 5VHR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	9	17	Right-handed alpha
Helix 2	AA2	G	18	27	Right-handed alpha
Helix 3	AA3	G	42	51	Right-handed alpha
Helix 4	AA4	G	52	63	Right-handed alpha
Helix 5	AA5	G	75	84	Right-handed alpha
Helix 6	AA6	G	85	96	Right-handed alpha
Helix 7	AA7	G	108	116	Right-handed alpha
Helix 8	AA8	G	118	128	Right-handed alpha
Helix 9	AA9	G	141	149	Right-handed alpha
Helix 10	AB1	G	151	160	Right-handed alpha
Helix 11	AB2	G	174	182	Right-handed alpha
Helix 12	AB3	G	184	194	Right-handed alpha
Helix 13	AB4	G	207	212	Right-handed alpha
Helix 14	AB5	A	160	166	Right-handed alpha
Helix 15	AB6	A	173	177	Right-handed 310
Helix 16	AB7	A	182	192	Right-handed alpha
Helix 17	AB8	A	192	197	Right-handed alpha
Helix 18	AB9	A	197	204	Right-handed alpha
Helix 19	AC1	A	223	231	Right-handed alpha
Helix 20	AC2	A	251	267	Right-handed alpha
Helix 21	AC3	A	277	280	Right-handed 310
Helix 22	AC4	A	292	308	Right-handed alpha
Helix 23	AC5	A	326	337	Right-handed alpha
Helix 24	AC6	A	347	349	Right-handed 310
Helix 25	AC7	A	350	359	Right-handed alpha
Helix 26	AC8	A	369	376	Right-handed alpha
Helix 27	AC9	A	381	398	Right-handed alpha
Helix 28	AD1	A	405	419	Right-handed alpha
Helix 29	AD2	B	190	203	Right-handed alpha
Helix 30	AD3	B	207	211	Right-handed 310
Helix 31	AD4	B	231	239	Right-handed alpha
Helix 32	AD5	B	253	258	Right-handed alpha
Helix 33	AD6	B	264	277	Right-handed alpha
Helix 34	AD7	B	302	318	Right-handed alpha
Helix 35	AD8	B	338	340	Right-handed 310
Helix 36	AD9	B	341	346	Right-handed alpha
Helix 37	AE1	B	359	369	Right-handed alpha
Helix 38	AE2	B	380	387	Right-handed alpha
Helix 39	AE3	B	391	407	Right-handed alpha
Helix 40	AE4	B	408	410	Right-handed 310
Helix 41	AE5	B	415	433	Right-handed alpha
Helix 42	AE6	D	172	182	Right-handed alpha
Helix 43	AE7	D	187	195	Right-handed alpha
Helix 44	AE8	D	213	223	Right-handed alpha
Helix 45	AE9	D	241	257	Right-handed alpha
Helix 46	AF1	D	279	299	Right-handed alpha
Helix 47	AF2	D	337	350	Right-handed alpha
Helix 48	AF3	D	361	370	Right-handed alpha
Helix 49	AF4	D	374	386	Right-handed alpha
Helix 50	AF5	D	395	406	Right-handed alpha
Helix 51	AF6	E	179	191	Right-handed alpha
Helix 52	AF7	E	211	225	Right-handed alpha
Helix 53	AF8	E	250	265	Right-handed alpha
Helix 54	AF9	E	306	317	Right-handed alpha
Helix 55	AG1	E	327	334	Right-handed alpha
Helix 56	AG2	E	339	356	Right-handed alpha
Helix 57	AG3	E	364	381	Right-handed alpha
Helix 58	AG4	F	192	208	Right-handed alpha
Helix 59	AG5	F	208	215	Right-handed alpha
Helix 60	AG6	F	232	245	Right-handed alpha
Helix 61	AG7	F	253	257	Right-handed 310
Helix 62	AG8	F	262	278	Right-handed alpha
Helix 63	AG9	F	287	292	Right-handed alpha
Helix 64	AH1	F	304	319	Right-handed alpha
Helix 65	AH2	F	358	371	Right-handed alpha
Helix 66	AH3	F	381	388	Right-handed alpha
Helix 67	AH4	F	392	409	Right-handed alpha
Helix 68	AH5	F	417	428	Right-handed alpha
Helix 69	AH6	C	147	151	Right-handed 310
Helix 70	AH7	C	154	162	Right-handed alpha
Helix 71	AH8	C	166	171	Right-handed alpha
Helix 72	AH9	C	172	176	Right-handed 310
Helix 73	AI1	C	197	207	Right-handed alpha
Helix 74	AI2	C	232	241	Right-handed alpha
Helix 75	AI3	C	261	283	Right-handed alpha
Helix 76	AI4	C	301	307	Right-handed alpha
Helix 77	AI5	C	326	336	Right-handed alpha
Helix 78	AI6	C	343	350	Right-handed alpha
Helix 79	AI7	C	357	373	Right-handed alpha
Helix 80	AI8	C	379	392	Right-handed alpha
Helix 81	AI9	f	11	15	Right-handed 310
Helix 82	AJ1	f	19	33	Right-handed alpha
Helix 83	AJ2	f	44	49	Right-handed alpha
Helix 84	AJ3	f	71	84	Right-handed alpha
Helix 85	AJ4	f	93	100	Right-handed alpha
Helix 86	AJ5	f	120	145	Right-handed alpha
Helix 87	AJ6	f	164	181	Right-handed alpha
Helix 88	AJ7	f	184	191	Right-handed alpha
Helix 89	AJ8	f	211	217	Right-handed alpha
Helix 90	AJ9	f	221	239	Right-handed alpha
Helix 91	AK1	f	241	258	Right-handed alpha
Helix 92	AK2	f	261	273	Right-handed alpha
Helix 93	AK3	f	274	288	Right-handed alpha
Helix 94	AK4	f	298	309	Right-handed alpha
Helix 95	AK5	f	310	324	Right-handed alpha
Helix 96	AK6	f	342	351	Right-handed alpha
Helix 97	AK7	f	355	361	Right-handed alpha
Helix 98	AK8	f	369	380	Right-handed alpha
Helix 99	AK9	f	397	402	Right-handed alpha
Helix 100	AL1	f	403	417	Right-handed alpha
Helix 101	AL2	f	421	430	Right-handed alpha
Helix 102	AL3	f	437	452	Right-handed alpha
Helix 103	AL4	f	458	464	Right-handed alpha
Helix 104	AL5	f	472	474	Right-handed 310
Helix 105	AL6	f	475	489	Right-handed alpha
Helix 106	AL7	f	495	508	Right-handed alpha
Helix 107	AL8	f	512	526	Right-handed alpha
Helix 108	AL9	f	535	548	Right-handed alpha
Helix 109	AM1	f	553	566	Right-handed alpha
Helix 110	AM2	f	573	582	Right-handed alpha
Helix 111	AM3	f	585	598	Right-handed alpha
Helix 112	AM4	f	606	616	Right-handed alpha
Helix 113	AM5	f	622	630	Right-handed alpha
Helix 114	AM6	f	630	635	Right-handed alpha
Helix 115	AM7	f	651	662	Right-handed alpha
Helix 116	AM8	f	668	680	Right-handed alpha
Helix 117	AM9	f	683	697	Right-handed alpha
Helix 118	AN1	f	716	728	Right-handed alpha
Helix 119	AN2	f	740	753	Right-handed alpha
Helix 120	AN3	f	774	777	Right-handed 310
Helix 121	AN4	f	778	784	Right-handed alpha
Helix 122	AN5	f	785	787	Right-handed 310
Helix 123	AN6	f	790	792	Right-handed 310
Helix 124	AN7	f	793	798	Right-handed alpha

There are 9 sheets in PDB entry 5VHR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	340	341	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	272	275	parallel
Strand 3	A	319	320	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	223	first strand
Strand 2	B	326	329	parallel
Strand 3	B	281	285	parallel
Strand 4	B	247	251	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	264	first strand
Strand 2	D	306	310	parallel
Strand 3	D	202	204	parallel
Strand 4	D	329	331	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	229	232	first strand
Strand 2	E	274	278	parallel
Strand 3	E	170	172	parallel
Strand 4	E	297	299	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	222	225	first strand
Strand 2	F	348	352	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	250	first strand
Strand 2	F	281	284	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	186	first strand
Strand 2	C	289	292	parallel
Strand 3	C	244	247	parallel
Strand 4	C	210	211	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	189	first strand
Strand 2	C	315	316	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VHR

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VHR