Analysis of interatomic Contacts of Structural Units in PDB entry:
5VHV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VHV entry

There are 2 chains in PDB entry 5VHV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5ALA 365
B
 ALA 5ASN 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5VHV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 13Right-handed 310
Helix 2
AA2
A
14 29Right-handed alpha
Helix 3
AA3
A
33 43Right-handed alpha
Helix 4
AA4
A
44 48Right-handed 310
Helix 5
AA5
A
49 65Right-handed alpha
Helix 6
AA6
A
68 80Right-handed alpha
Helix 7
AA7
A
81 83Right-handed 310
Helix 8
AA8
A
87 89Right-handed 310
Helix 9
AA9
A
90 100Right-handed alpha
Helix 10
AB1
A
103 115Right-handed alpha
Helix 11
AB2
A
122 131Right-handed alpha
Helix 12
AB3
A
131 143Right-handed alpha
Helix 13
AB4
A
147 157Right-handed alpha
Helix 14
AB5
A
168 174Right-handed alpha
Helix 15
AB6
A
178 186Right-handed alpha
Helix 16
AB7
A
190 206Right-handed alpha
Helix 17
AB8
A
208 218Right-handed alpha
Helix 18
AB9
A
223 234Right-handed alpha
Helix 19
AC1
A
234 240Right-handed alpha
Helix 20
AC2
A
242 249Right-handed alpha
Helix 21
AC3
B
8 13Right-handed 310
Helix 22
AC4
B
14 29Right-handed alpha
Helix 23
AC5
B
33 43Right-handed alpha
Helix 24
AC6
B
44 48Right-handed 310
Helix 25
AC7
B
49 65Right-handed alpha
Helix 26
AC8
B
68 80Right-handed alpha
Helix 27
AC9
B
81 83Right-handed 310
Helix 28
AD1
B
87 89Right-handed 310
Helix 29
AD2
B
90 100Right-handed alpha
Helix 30
AD3
B
103 115Right-handed alpha
Helix 31
AD4
B
122 131Right-handed alpha
Helix 32
AD5
B
131 143Right-handed alpha
Helix 33
AD6
B
147 157Right-handed alpha
Helix 34
AD7
B
168 174Right-handed alpha
Helix 35
AD8
B
178 186Right-handed alpha
Helix 36
AD9
B
190 206Right-handed alpha
Helix 37
AE1
B
208 217Right-handed alpha
Helix 38
AE2
B
223 234Right-handed alpha
Helix 39
AE3
B
234 240Right-handed alpha
Helix 40
AE4
B
242 249Right-handed alpha
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There are 4 sheets in PDB entry 5VHV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 265first strand
Strand 2
A
274 283anti-parallel
Strand 3
A
323 331anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
354 363parallel
Strand 3
A
343 351anti-parallel
Strand 4
A
289 298anti-parallel
Strand 5
A
309 318anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 265first strand
Strand 2
B
274 283anti-parallel
Strand 3
B
323 331anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 269first strand
Strand 2
B
354 363parallel
Strand 3
B
343 351anti-parallel
Strand 4
B
289 300anti-parallel
Strand 5
B
306 318anti-parallel
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