Analysis of interatomic Contacts of Structural Units in PDB entry:
5VI4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VI4 entry

There are 6 chains in PDB entry 5VI4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 114	LYS 265
B	SER 29	LEU 323
C	ARG 23	LYS 348
D	SER 114	LYS 265
E	SER 27	ARG 322
F	ARG 23	SER 170

There are 25 helices in PDB entry 5VI4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	212	215	Right-handed 310
Helix 2	AA2	A	255	259	Right-handed 310
Helix 3	AA3	B	84	88	Right-handed 310
Helix 4	AA4	B	120	122	Right-handed 310
Helix 5	AA5	B	141	145	Right-handed 310
Helix 6	AA6	B	178	182	Right-handed 310
Helix 7	AA7	C	48	53	Right-handed alpha
Helix 8	AA8	C	57	64	Right-handed alpha
Helix 9	AA9	C	105	108	Right-handed 310
Helix 10	AB1	C	203	207	Right-handed 310
Helix 11	AB2	C	236	240	Right-handed 310
Helix 12	AB3	D	212	215	Right-handed 310
Helix 13	AB4	D	255	259	Right-handed 310
Helix 14	AB5	E	84	88	Right-handed 310
Helix 15	AB6	E	120	122	Right-handed 310
Helix 16	AB7	E	141	145	Right-handed 310
Helix 17	AB8	E	178	182	Right-handed 310
Helix 18	AB9	E	300	304	Right-handed 310
Helix 19	AC1	F	48	51	Right-handed 310
Helix 20	AC2	F	57	64	Right-handed alpha
Helix 21	AC3	F	87	90	Right-handed 310
Helix 22	AC4	F	105	108	Right-handed 310
Helix 23	AC5	F	203	207	Right-handed 310
Helix 24	AC6	F	236	240	Right-handed 310
Helix 25	AC7	F	324	328	Right-handed 310

There are 35 sheets in PDB entry 5VI4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	125	first strand
Strand 2	A	156	166	anti-parallel
Strand 3	A	177	185	anti-parallel
Strand 4	A	217	221	anti-parallel
Strand 5	A	227	231	anti-parallel
Strand 6	A	261	264	anti-parallel
Strand 7	A	117	125	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	134	first strand
Strand 2	A	141	145	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	195	first strand
Strand 2	A	202	205	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	242	first strand
Strand 2	A	245	250	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	103	111	parallel
Strand 3	B	90	95	anti-parallel
Strand 4	B	52	53	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	41	first strand
Strand 2	B	77	83	anti-parallel
Strand 3	B	72	74	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	131	first strand
Strand 2	B	196	209	parallel
Strand 3	B	183	193	anti-parallel
Strand 4	B	152	155	anti-parallel
Strand 5	B	158	159	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	138	first strand
Strand 2	B	171	174	anti-parallel
Strand 3	B	165	168	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	221	first strand
Strand 2	B	237	243	anti-parallel
Strand 3	B	287	293	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	315	322	parallel
Strand 3	B	306	312	anti-parallel
Strand 4	B	252	258	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	122	132	parallel
Strand 3	C	35	38	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	122	132	parallel
Strand 3	C	110	117	anti-parallel
Strand 4	C	67	74	anti-parallel
Strand 5	C	81	82	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	46	first strand
Strand 2	C	98	101	anti-parallel
Strand 3	C	92	95	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	150	first strand
Strand 2	C	221	234	parallel
Strand 3	C	208	218	anti-parallel
Strand 4	C	174	179	anti-parallel
Strand 5	C	182	184	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	159	first strand
Strand 2	C	196	199	anti-parallel
Strand 3	C	190	193	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	247	first strand
Strand 2	C	264	270	anti-parallel
Strand 3	C	310	316	anti-parallel
Strand 4	C	300	304	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	255	first strand
Strand 2	C	347	348	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	284	first strand
Strand 2	C	330	336	anti-parallel
Strand 3	C	339	345	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	125	first strand
Strand 2	D	156	166	anti-parallel
Strand 3	D	177	185	anti-parallel
Strand 4	D	217	221	anti-parallel
Strand 5	D	227	231	anti-parallel
Strand 6	D	261	264	anti-parallel
Strand 7	D	117	125	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	133	first strand
Strand 2	D	142	145	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	195	first strand
Strand 2	D	202	205	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	242	first strand
Strand 2	D	245	250	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	33	first strand
Strand 2	E	103	111	parallel
Strand 3	E	89	95	anti-parallel
Strand 4	E	52	56	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	41	first strand
Strand 2	E	77	83	anti-parallel
Strand 3	E	71	74	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	124	131	first strand
Strand 2	E	196	209	parallel
Strand 3	E	183	193	anti-parallel
Strand 4	E	152	155	anti-parallel
Strand 5	E	158	159	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	138	first strand
Strand 2	E	171	174	anti-parallel
Strand 3	E	165	168	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	212	221	first strand
Strand 2	E	237	247	anti-parallel
Strand 3	E	287	293	anti-parallel
Strand 4	E	271	274	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	227	first strand
Strand 2	E	315	322	parallel
Strand 3	E	306	312	anti-parallel
Strand 4	E	252	258	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	29	first strand
Strand 2	F	122	132	parallel
Strand 3	F	35	38	parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	29	first strand
Strand 2	F	122	132	parallel
Strand 3	F	110	117	anti-parallel
Strand 4	F	67	74	anti-parallel
Strand 5	F	81	82	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	46	first strand
Strand 2	F	98	101	anti-parallel
Strand 3	F	92	95	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	150	first strand
Strand 2	F	221	234	parallel
Strand 3	F	208	218	anti-parallel
Strand 4	F	174	179	anti-parallel
Strand 5	F	182	184	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	156	159	first strand
Strand 2	F	196	199	anti-parallel
Strand 3	F	190	193	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	244	247	first strand
Strand 2	F	264	270	anti-parallel
Strand 3	F	310	316	anti-parallel
Strand 4	F	300	304	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	279	284	first strand
Strand 2	F	330	336	anti-parallel
Strand 3	F	339	345	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VI4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VI4