Analysis of interatomic Contacts of Structural Units in PDB entry:
5VI5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5VI5 entry

There are 10 chains in PDB entry 5VI5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
O	G 1	C 49
P	G 1	C 49
Q	U 1	A 4
A	LEU 2	LEU 221
B	MET 1	GLU 233
C	ASN 21	ASP 1142
D	VAL 4	ALA 1283
E	SER 24	GLY 106
F	ALA 149	ASP 466
J	PRO 26	GLY 111

There are120 helices in PDB entry 5VI5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	46	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	108	110	Right-handed 310
Helix 4	AA4	A	203	219	Right-handed alpha
Helix 5	AA5	B	29	45	Right-handed alpha
Helix 6	AA6	B	72	82	Right-handed alpha
Helix 7	AA7	B	108	110	Right-handed 310
Helix 8	AA8	B	153	158	Right-handed alpha
Helix 9	AA9	B	203	224	Right-handed alpha
Helix 10	AB1	C	45	56	Right-handed alpha
Helix 11	AB2	C	58	68	Right-handed alpha
Helix 12	AB3	C	75	85	Right-handed alpha
Helix 13	AB4	C	109	117	Right-handed alpha
Helix 14	AB5	C	226	233	Right-handed alpha
Helix 15	AB6	C	235	244	Right-handed alpha
Helix 16	AB7	C	248	255	Right-handed alpha
Helix 17	AB8	C	260	273	Right-handed alpha
Helix 18	AB9	C	279	285	Right-handed alpha
Helix 19	AC1	C	285	291	Right-handed alpha
Helix 20	AC2	C	300	312	Right-handed alpha
Helix 21	AC3	C	326	342	Right-handed alpha
Helix 22	AC4	C	371	398	Right-handed alpha
Helix 23	AC5	C	403	408	Right-handed alpha
Helix 24	AC6	C	411	423	Right-handed alpha
Helix 25	AC7	C	435	444	Right-handed alpha
Helix 26	AC8	C	460	465	Right-handed alpha
Helix 27	AC9	C	467	471	Right-handed 310
Helix 28	AD1	C	524	529	Right-handed alpha
Helix 29	AD2	C	565	567	Right-handed 310
Helix 30	AD3	C	579	584	Right-handed alpha
Helix 31	AD4	C	587	591	Right-handed 310
Helix 32	AD5	C	592	604	Right-handed alpha
Helix 33	AD6	C	620	629	Right-handed alpha
Helix 34	AD7	C	730	735	Right-handed alpha
Helix 35	AD8	C	768	773	Right-handed 310
Helix 36	AD9	C	811	817	Right-handed alpha
Helix 37	AE1	C	911	916	Right-handed alpha
Helix 38	AE2	C	919	933	Right-handed alpha
Helix 39	AE3	C	944	948	Right-handed 310
Helix 40	AE4	C	972	981	Right-handed alpha
Helix 41	AE5	C	1027	1032	Right-handed alpha
Helix 42	AE6	C	1060	1071	Right-handed alpha
Helix 43	AE7	C	1072	1081	Right-handed alpha
Helix 44	AE8	C	1086	1100	Right-handed alpha
Helix 45	AE9	C	1109	1122	Right-handed alpha
Helix 46	AF1	D	16	23	Right-handed alpha
Helix 47	AF2	D	48	53	Right-handed alpha
Helix 48	AF3	D	86	91	Right-handed alpha
Helix 49	AF4	D	112	119	Right-handed alpha
Helix 50	AF5	D	121	130	Right-handed alpha
Helix 51	AF6	D	140	147	Right-handed alpha
Helix 52	AF7	D	147	187	Right-handed alpha
Helix 53	AF8	D	190	228	Right-handed alpha
Helix 54	AF9	D	238	247	Right-handed alpha
Helix 55	AG1	D	256	267	Right-handed alpha
Helix 56	AG2	D	269	284	Right-handed alpha
Helix 57	AG3	D	290	305	Right-handed alpha
Helix 58	AG4	D	308	311	Right-handed 310
Helix 59	AG5	D	321	325	Right-handed 310
Helix 60	AG6	D	338	361	Right-handed alpha
Helix 61	AG7	D	363	383	Right-handed alpha
Helix 62	AG8	D	401	407	Right-handed alpha
Helix 63	AG9	D	445	452	Right-handed alpha
Helix 64	AH1	D	452	463	Right-handed alpha
Helix 65	AH2	D	469	478	Right-handed alpha
Helix 66	AH3	D	481	492	Right-handed alpha
Helix 67	AH4	D	505	507	Right-handed 310
Helix 68	AH5	D	528	533	Right-handed alpha
Helix 69	AH6	D	548	557	Right-handed alpha
Helix 70	AH7	D	579	590	Right-handed alpha
Helix 71	AH8	D	614	624	Right-handed alpha
Helix 72	AH9	D	643	651	Right-handed alpha
Helix 73	AI1	D	666	676	Right-handed alpha
Helix 74	AI2	D	688	703	Right-handed alpha
Helix 75	AI3	D	704	726	Right-handed alpha
Helix 76	AI4	D	739	759	Right-handed alpha
Helix 77	AI5	D	767	792	Right-handed alpha
Helix 78	AI6	D	796	804	Right-handed alpha
Helix 79	AI7	D	809	817	Right-handed alpha
Helix 80	AI8	D	844	881	Right-handed alpha
Helix 81	AI9	D	944	955	Right-handed alpha
Helix 82	AJ1	D	975	979	Right-handed alpha
Helix 83	AJ2	D	993	1004	Right-handed alpha
Helix 84	AJ3	D	1005	1009	Right-handed 310
Helix 85	AJ4	D	1028	1037	Right-handed alpha
Helix 86	AJ5	D	1082	1086	Right-handed 310
Helix 87	AJ6	D	1118	1127	Right-handed alpha
Helix 88	AJ7	D	1127	1146	Right-handed alpha
Helix 89	AJ8	D	1151	1163	Right-handed alpha
Helix 90	AJ9	D	1184	1192	Right-handed alpha
Helix 91	AK1	D	1210	1217	Right-handed alpha
Helix 92	AK2	D	1220	1226	Right-handed alpha
Helix 93	AK3	D	1229	1240	Right-handed alpha
Helix 94	AK4	D	1248	1256	Right-handed alpha
Helix 95	AK5	D	1261	1265	Right-handed 310
Helix 96	AK6	D	1267	1271	Right-handed 310
Helix 97	AK7	D	1276	1283	Right-handed alpha
Helix 98	AK8	E	36	42	Right-handed alpha
Helix 99	AK9	E	46	65	Right-handed alpha
Helix 100	AL1	E	87	98	Right-handed alpha
Helix 101	AL2	F	150	159	Right-handed alpha
Helix 102	AL3	F	164	174	Right-handed alpha
Helix 103	AL4	F	180	208	Right-handed alpha
Helix 104	AL5	F	212	237	Right-handed alpha
Helix 105	AL6	F	237	246	Right-handed alpha
Helix 106	AL7	F	247	249	Right-handed 310
Helix 107	AL8	F	254	273	Right-handed alpha
Helix 108	AL9	F	280	301	Right-handed alpha
Helix 109	AM1	F	307	329	Right-handed alpha
Helix 110	AM2	F	333	342	Right-handed alpha
Helix 111	AM3	F	344	355	Right-handed alpha
Helix 112	AM4	F	372	377	Right-handed 310
Helix 113	AM5	F	384	404	Right-handed alpha
Helix 114	AM6	F	406	418	Right-handed alpha
Helix 115	AM7	F	426	435	Right-handed alpha
Helix 116	AM8	F	437	454	Right-handed alpha
Helix 117	AM9	F	454	459	Right-handed alpha
Helix 118	AN1	F	461	465	Right-handed 310
Helix 119	AN2	J	80	89	Right-handed alpha
Helix 120	AN3	J	90	111	Right-handed alpha

There are 38 sheets in PDB entry 5VI5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	11	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	197	anti-parallel
Strand 4	A	175	179	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	133	147	anti-parallel
Strand 3	A	47	56	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	100	first strand
Strand 2	A	133	147	anti-parallel
Strand 3	A	166	168	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	116	118	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	13	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	189	198	anti-parallel
Strand 4	B	171	181	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	100	first strand
Strand 2	B	133	144	anti-parallel
Strand 3	B	47	56	anti-parallel
Strand 4	B	162	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	116	118	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	963	964	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	94	103	anti-parallel
Strand 3	C	121	132	anti-parallel
Strand 4	C	142	149	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	428	430	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	370	first strand
Strand 2	C	168	172	anti-parallel
Strand 3	C	445	447	parallel
Strand 4	C	488	490	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	182	first strand
Strand 2	C	189	196	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	347	first strand
Strand 2	C	353	355	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	510	anti-parallel
Strand 3	C	515	522	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	510	anti-parallel
Strand 3	C	569	571	anti-parallel
Strand 4	C	532	533	parallel
Strand 5	C	549	553	anti-parallel
Strand 6	C	559	563	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	658	662	first strand
Strand 2	C	648	653	anti-parallel
Strand 3	C	639	644	anti-parallel
Strand 4	C	686	687	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	678	679	first strand
Strand 2	C	694	695	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	883	884	first strand
Strand 2	C	876	878	anti-parallel
Strand 3	C	1014	1023	anti-parallel
Strand 4	C	707	714	anti-parallel
Strand 5	C	906	908	parallel
Strand 6	C	726	729	anti-parallel
Strand 7	C	886	890	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	883	884	first strand
Strand 2	C	876	878	anti-parallel
Strand 3	C	1014	1023	anti-parallel
Strand 4	C	998	999	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	740	751	first strand
Strand 2	C	856	868	anti-parallel
Strand 3	C	835	844	anti-parallel
Strand 4	C	786	788	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	759	760	first strand
Strand 2	C	796	799	anti-parallel
Strand 3	C	823	825	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	792	794	first strand
Strand 2	C	828	829	anti-parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1033	1035	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel
Strand 7	D	522	524	anti-parallel
Strand 8	D	425	432	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1058	1059	first strand
Strand 2	D	420	421	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1135	1136	first strand
Strand 2	C	1127	1129	anti-parallel
Strand 3	D	9	11	anti-parallel
Strand 4	D	1243	1244	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	92	102	parallel
Strand 3	D	313	319	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	335	337	anti-parallel
Strand 3	F	359	360	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	634	637	first strand
Strand 2	D	661	664	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	885	887	first strand
Strand 2	D	973	974	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	896	898	first strand
Strand 2	D	959	962	anti-parallel
Strand 3	D	923	924	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1076	1081	first strand
Strand 2	D	1062	1069	anti-parallel
Strand 3	D	1052	1059	anti-parallel
Strand 4	D	1105	1106	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1165	1168	first strand
Strand 2	D	1180	1183	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1272	1275	first strand
Strand 2	E	101	104	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	45	first strand
Strand 2	J	27	34	anti-parallel
Strand 3	J	61	64	anti-parallel
Strand 4	J	53	55	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5VI5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5VI5